RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 LOC102723532A0A0G2JNH3 316 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 HDAC3O15379 428 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 CSO75390 466 aaKnown RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 PDYNP01213 254 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 SERPINA6P08185 405 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 HSD3B1P14060 373 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 HSD3B2P26439 372 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 NEK2P51955 445 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 GNGT1P63211 74 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 ACY1Q03154 408 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 PWP1Q13610 501 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 KCNAB1Q14722 419 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 ABRAXAS2Q15018 415 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 DEFB110Q30KQ9 67 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 SGO1Q5FBB7 561 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 TCTE1Q5JU00 501 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 FAM219BQ5XKK7 198 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 ADNP2Q6IQ32 1131 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 TRIM46Q7Z4K8 759 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 ASPGQ86U10 573 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 TMPRSS12Q86WS5 348 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 OR4N4Q8N0Y3 316 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 CAMKVQ8NCB2 501 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 NT5CQ8TCD5 201 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 CREB3L4Q8TEY5 395 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 TWIST2Q8WVJ9 160 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 SLC13A3Q8WWT9 602 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 ADAMTS14Q8WXS8 1223 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 CHMP6Q96FZ7 201 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 LIN37Q96GY3 246 aaPredicted RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 MTERF1Q99551 399 aaKnown RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 CMKLR1Q99788 373 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 BRF2Q9HAW0 419 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 DMRT3Q9NQL9 472 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 PFDN4Q9NQP4 134 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 FARSBQ9NSD9 589 aaKnown RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 DLL3Q9NYJ7 618 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 AKAP7Q9P0M2 348 aaPredicted RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 MARCOQ9UEW3 520 aaPredicted RBP13.71□□□□□ -0.21
UPF1-211ENST00000600868 FIS1Q9Y3D6 152 aa13.71□□□□□ -0.21
UPF1-211ENST00000600868 MAGEB17A8MXT2 336 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 TXNDC9O14530 226 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 TGDSO95455 350 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 KITP10721 976 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 HTR6P50406 440 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 RGS1Q08116 209 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 CSTF3Q12996 717 aaKnown RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 EIF3IQ13347 325 aaKnown RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 GPR19Q15760 415 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 CYB5D1Q6P9G0 228 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 BPHLQ86WA6 291 aaPredicted RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 WDR75Q8IWA0 830 aaKnown RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 LRRC34Q8IZ02 419 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 ZNF655Q8N720 491 aaPredicted RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 CSNK1A1LQ8N752 337 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 BMPERQ8N8U9 685 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 GBP7Q8N8V2 638 aaPredicted RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 OR8K5Q8NH50 307 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 N4BP2L2Q92802 583 aaPredicted RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 MTFMTQ96DP5 389 aaKnown RBP13.7□□□□□ -0.22
UPF1-211ENST00000600868 CMTM7Q96FZ5 175 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 MS4A8Q9BY19 250 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 TUBB1Q9H4B7 451 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 FANCEQ9HB96 536 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 FGF21Q9NSA1 209 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 FGFR1OP2Q9NVK5 253 aa13.7□□□□□ -0.22
UPF1-211ENST00000600868 DCDC2BA2VCK2 349 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 GMNCA6NCL1 334 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 LRIT2A6NDA9 550 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 TRPC5OSA6NMA1 111 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SRRM3A6NNA2 597 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 EFCAB7A8K855 629 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 B4E171 279 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 TMEM150CB9EJG8 249 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 H3BMH7 237 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SLC28A1O00337 649 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 ZNF195O14628 629 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 PIP5K1BO14986 540 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 ZSCAN9O15535 394 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 NDUFS4O43181 175 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SHOX2O60902 331 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 TBX6O95947 436 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 SLC35G6P0C7Q6 338 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 PTX3P26022 381 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 TSPAN7P41732 249 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 CLDN6P56747 220 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 VSX2P58304 361 aaPredicted RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 RPS13P62277 151 aaKnown RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 CYP4F2P78329 520 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 MC2RQ01718 297 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 BTKQ06187 659 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 HYAL2Q12891 473 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 TUBB3Q13509 450 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 DDX39BQ13838 428 aaKnown RBP13.69□□□□□ -0.22
UPF1-211ENST00000600868 PRTGQ2VWP7 1150 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 ADPRMQ3LIE5 342 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 WASHC2DQ5SRD0 308 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 SCIMPQ6UWF3 145 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 RNF175Q8N4F7 328 aa13.69□□□□□ -0.22
UPF1-211ENST00000600868 CCT6BQ92526 530 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms