RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 IQCCQ4KMZ1 466 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SYPL2Q5VXT5 272 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 PAQR3Q6TCH7 311 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 DIRAS2Q96HU8 199 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 TSGA13Q96PP4 275 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SNAI1O95863 264 aaPredicted RBP19.85■□□□□ 0.77
UPF1-207ENST00000599848 HLA-EP13747 358 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 CHRNB4P30926 498 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 ARHGAP8P85298 464 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 PLCXD2Q0VAA5 305 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 C3orf33Q6P1S2 294 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 SYCE2Q6PIF2 218 aa19.85■□□□□ 0.77
UPF1-207ENST00000599848 OR14I1A6ND48 311 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 PDYNP01213 254 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 RAB33AQ14088 237 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 LYSMD4Q5XG99 296 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 UNC5DQ6UXZ4 953 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 SLITRK4Q8IW52 837 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 ZNF101Q8IZC7 436 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 TRIB2Q92519 343 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GORASP1Q9BQQ3 440 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 LGALS13Q9UHV8 139 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GPR160Q9UJ42 338 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 ARHGEF28Q8N1W1 1705 aaKnown RBP19.84■□□□□ 0.77
UPF1-207ENST00000599848 ABCC6O95255 1503 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 A0A1W2PP55 124 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 H3BNX3 289 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 XKP51811 444 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 SCN1BQ07699 218 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 DGLUCYQ7Z3D6 616 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 BBS10Q8TAM1 723 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GLYATL1Q969I3 302 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GTPBP3Q969Y2 492 aaKnown RBP19.84■□□□□ 0.77
UPF1-207ENST00000599848 TMEM98Q9Y2Y6 226 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 TTC34A8MYJ7 566 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 NIPSNAP2O75323 286 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GRK5P34947 590 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 INCA1Q0VD86 236 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 GALNT2Q10471 571 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 SPATS1Q496A3 300 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 CWF19L1Q69YN2 538 aaKnown RBP19.84■□□□□ 0.77
UPF1-207ENST00000599848 RPL13AP3Q6NVV1 102 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 ALYREFQ86V81 257 aaKnown RBP19.84■□□□□ 0.77
UPF1-207ENST00000599848 ANKRD46Q86W74 232 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 E7EQ34 232 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 PEX10O60683 326 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 ITGA5P08648 1049 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 HSD3B1P14060 373 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 HSD3B2P26439 372 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 ERVK-5Q9HDB9 667 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 PIGVQ9NUD9 493 aa19.84■□□□□ 0.77
UPF1-207ENST00000599848 AXIN1O15169 862 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 ECH1Q13011 328 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 CST6Q15828 149 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 GALNT5Q7Z7M9 940 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 PIM3Q86V86 326 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 ZNF366Q8N895 744 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 HDHD5Q9BXW7 423 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 WDR45Q9Y484 360 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 KHNYNO15037 678 aaKnown RBP19.83■□□□□ 0.77
UPF1-207ENST00000599848 ZNF35P13682 527 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 TMEM35AQ53FP2 167 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 BRF2Q9HAW0 419 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 RAB26Q9ULW5 256 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 A0A0G2JN53 185 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 ZNF878C9JN71 531 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 YKT6O15498 198 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 SLC6A4P31645 630 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 KCNC1P48547 511 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 FAM110BQ8TC76 370 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 KCNC2Q96PR1 638 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 MAPKAP1Q9BPZ7 522 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 RNF39Q9H2S5 420 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 TXNRD2Q9NNW7 524 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 C11orf16Q9NQ32 467 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 NLE1Q9NVX2 485 aaPredicted RBP19.83■□□□□ 0.77
UPF1-207ENST00000599848 RDH8Q9NYR8 311 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 LIPT1Q9Y234 373 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 SLC22A14Q9Y267 594 aa19.83■□□□□ 0.77
UPF1-207ENST00000599848 R3HDM2Q9Y2K5 976 aaKnown RBP19.83■□□□□ 0.77
UPF1-207ENST00000599848 GNB5O14775 395 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 ECI2O75521 394 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 LEFTY1O75610 366 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 VNN1O95497 513 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 PRKCGP05129 697 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 UNGP13051 313 aaPredicted RBP19.83■□□□□ 0.76
UPF1-207ENST00000599848 ACVRL1P37023 503 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 VSX2P58304 361 aaPredicted RBP19.83■□□□□ 0.76
UPF1-207ENST00000599848 KCTD18Q6PI47 426 aaPredicted RBP19.83■□□□□ 0.76
UPF1-207ENST00000599848 HOXD1Q9GZZ0 328 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 FZD4Q9ULV1 537 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 SRPK3Q9UPE1 567 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 A0A075B6Q4 140 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 PPEF2O14830 753 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 LSM3P62310 102 aaKnown RBP19.83■□□□□ 0.76
UPF1-207ENST00000599848 YIPF7Q8N8F6 280 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 PCDHGB6Q9Y5F9 930 aa19.83■□□□□ 0.76
UPF1-207ENST00000599848 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.82■□□□□ 0.76
UPF1-207ENST00000599848 MZT1Q08AG7 82 aa19.82■□□□□ 0.76
UPF1-207ENST00000599848 PMS2P3Q13401 168 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms