RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 SLC18A2Q05940 514 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ZNF460Q14592 562 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 METRNLQ641Q3 311 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 RPUSD3Q6P087 351 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 PAQR3Q6TCH7 311 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 EXOC3L1Q86VI1 746 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 AMZ2Q86W34 360 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SPNS2Q8IVW8 549 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 HM13Q8TCT9 377 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ANKRD49Q8WVL7 239 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ELMO1Q92556 727 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ARL8AQ96BM9 186 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 PTERQ96BW5 349 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ZBTB9Q96C00 473 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 PDLIM5Q96HC4 596 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 CABS1Q96KC9 395 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 C17orf62Q9BQA9 187 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ACBD3Q9H3P7 528 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SYTL2Q9HCH5 934 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 TRMT6Q9UJA5 497 aaKnown RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 SERTAD3Q9UJW9 196 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 ACTL7BQ9Y614 415 aa13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 NCOA6Q14686 2063 aaPredicted RBP13.27□□□□□ -0.29
SHKBP1-218ENST00000598907 A0A087X1B8 175 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 A0A096LPK6 155 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 GSAPA4D1B5 854 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 GOLGA6L10A6NI86 522 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 SLC19A2O60779 497 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 COL6A2P12110 1019 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ST6GAL1P15907 406 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 PBLDP30039 288 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ATP5DP30049 168 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 PRRC2AP48634 2157 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ARG2P78540 354 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 PLOD1Q02809 727 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 RBPJQ06330 500 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 PDAP1Q13442 181 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 TTMPQ5BVD1 217 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ACSBG2Q5FVE4 666 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ISLR2Q6UXK2 745 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 NAPRTQ6XQN6 538 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 CYHR1Q6ZMK1 362 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 FAM83HQ6ZRV2 1179 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 OTOAQ7RTW8 1153 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 CNTRLQ7Z7A1 2325 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 CENPLQ8N0S6 344 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 LILRA3Q8N6C8 439 aaPredicted RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ASZ1Q8WWH4 475 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 FAM136AQ96C01 138 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 THOC3Q96J01 351 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 COG4Q9H9E3 785 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 GPAMQ9HCL2 828 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 SENP1Q9P0U3 644 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 ACOT9Q9Y305 439 aa13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 FLNAP21333 2647 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-218ENST00000598907 KIAA1324LA8MWY0 1029 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 F10P00742 488 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 APOA4P06727 396 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 HBQ1P09105 142 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 PYGBP11216 843 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 MTHFD1P11586 935 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 PVRP15151 417 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 KRT4P19013 534 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 AGAP20933 346 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 GMPRP36959 345 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 DLG1Q12959 904 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 PRKAA1Q13131 559 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 RPA4Q13156 261 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 MFAP5Q13361 173 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 NFE2L1Q14494 772 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 DEFB110Q30KQ9 67 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 TTLL9Q3SXZ7 439 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 NEK10Q6ZWH5 1172 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 RAPH1Q70E73 1250 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 LCA5Q86VQ0 697 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 VRK3Q8IV63 474 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 CPNE9Q8IYJ1 553 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 CFAP206Q8IYR0 622 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 GPR135Q8IZ08 494 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 SLC22A15Q8IZD6 547 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 NKAPQ8N5F7 415 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 BANPQ8N9N5 519 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 EEF1AKMT1Q8WVE0 214 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 N4BP2L2Q92802 583 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 ATP6V1G3Q96LB4 118 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 GPR78Q96P69 363 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 LHPPQ9H008 270 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 ENKD1Q9H0I2 346 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 STMN4Q9H169 189 aaPredicted RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 CENPHQ9H3R5 247 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 SSU72Q9NP77 194 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 MKS1Q9NXB0 559 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 DHCR7Q9UBM7 475 aaKnown RBP13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 FAM8A1Q9UBU6 413 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 POMT2Q9UKY4 750 aa13.25□□□□□ -0.29
SHKBP1-218ENST00000598907 GOLGA8RI6L899 631 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 KLHL18O94889 574 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 KLHL2O95198 593 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 GSTA1P08263 222 aa13.24□□□□□ -0.29
SHKBP1-218ENST00000598907 CCDC166P0CW27 439 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms