RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SNRNP200O75643 2136 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 A0A0A6YYC8 382 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 I3L1I5 382 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 K7EPI3 171 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 PEX12O00623 359 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 NDUFS4O43181 175 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 SERPIND1P05546 499 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 GCAP28676 217 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 HPDP32754 393 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ALDH18A1P54886 795 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 IL10RAQ13651 578 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 HERC3Q15034 1050 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 NKG7Q16617 165 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 SOWAHCQ53LP3 525 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 XKR6Q5GH73 641 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 TMEM214Q6NUQ4 689 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 METTL2BQ6P1Q9 378 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 WDR93Q6P2C0 686 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 TMIGD1Q6UXZ0 262 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ARHGEF39Q8N4T4 335 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 NT5CQ8TCD5 201 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ACMSDQ8TDX5 336 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ADAMTS17Q8TE56 1095 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 ESAMQ96AP7 390 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 MIEF2Q96C03 454 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 PTCD3Q96EY7 689 aaKnown RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 EFCAB11Q9BUY7 163 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 EPB41L4BQ9H329 900 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 SYNPO2LQ9H987 977 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 MKKSQ9NPJ1 570 aaPredicted RBP16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 TUBD1Q9UJT1 453 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 KCNMB2Q9Y691 235 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 FAM208BQ5VWN6 2430 aa16.43■□□□□ 0.22
SHKBP1-212ENST00000596163 FOXS1O43638 330 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 KLK8O60259 260 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 SMIM24O75264 130 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 MED26O95402 600 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 NSA2O95478 260 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 FURINP09958 794 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 MTHFD2P13995 350 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 EPB42P16452 691 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 VARSP26640 1264 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 OTX2P32243 289 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 PIK3CGP48736 1102 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 RRADP55042 308 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 POLE2P56282 527 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 IRF8Q02556 426 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 COL9A2Q14055 689 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 SLBPQ14493 270 aaKnown RBP eCLIP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 SETDB1Q15047 1291 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 TBCCQ15814 346 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 PFKFB4Q16877 469 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 FBXO48Q5FWF7 155 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 TECRLQ5HYJ1 363 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 EMBQ6PCB8 327 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 MED25Q71SY5 747 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 COX15Q7KZN9 410 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 ABHD13Q7L211 337 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 APLFQ8IW19 511 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 PLD6Q8N2A8 252 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 TMEM102Q8N9M5 508 aaPredicted RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 ZNF740Q8NDX6 193 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 UBE2E3Q969T4 207 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 MRPL57Q9BQC6 102 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 SEMA3GQ9NS98 782 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 C14orf105Q9NVL8 296 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 GEMIN8Q9NWZ8 242 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 CPSF2Q9P2I0 782 aaKnown RBP16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 TRPC4Q9UBN4 977 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 MAP4K5Q9Y4K4 846 aa16.42■□□□□ 0.22
SHKBP1-212ENST00000596163 ANKDD1BA6NHY2 528 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 VSTM2BA6NLU5 285 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 CNOT3O75175 753 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 RFPL1O75677 317 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 STATHP02808 62 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 TUBBP07437 444 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 SERPINA6P08185 405 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 CASP2P42575 452 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 VSNL1P62760 191 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 PCBP2Q15366 365 aaKnown RBP eCLIP16.41■□□□□ 0.226e-9■■■■■ 40.7
SHKBP1-212ENST00000596163 PCSK4Q6UW60 755 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 KCT2Q8NC54 265 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 ZCCHC10Q8TBK6 192 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 STT3BQ8TCJ2 826 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 WDR34Q96EX3 536 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 FER1L6-AS2Q96M78 137 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 MACROD1Q9BQ69 325 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 SPNS1Q9H2V7 528 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 MRPL46Q9H2W6 279 aaKnown RBP16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 ACSS2Q9NR19 701 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 COPG2Q9UBF2 871 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 CTSFQ9UBX1 484 aa16.41■□□□□ 0.22
SHKBP1-212ENST00000596163 SEC16AO15027 2179 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 IGLV3-12A0A075B6K2 115 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 MKRN2OSH3BPM6 223 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 PCDH17O14917 1159 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 ZGLP1P0C6A0 271 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 FAM87AP0C7U9 286 aa16.4■□□□□ 0.22
SHKBP1-212ENST00000596163 ALOX12P18054 663 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms