RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 TMPRSS11BQ86T26 416 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 LSM14AQ8ND56 463 aaKnown RBP10.59□□□□□ -0.71
VRK3-210ENST00000596121 RHEBL1Q8TAI7 183 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 ZCCHC10Q8TBK6 192 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 CREB3L4Q8TEY5 395 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 MZB1Q8WU39 189 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 APOBEC4Q8WW27 367 aaKnown RBP10.59□□□□□ -0.71
VRK3-210ENST00000596121 SLC13A3Q8WWT9 602 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 COL26A1Q96A83 441 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 FKBP10Q96AY3 582 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 KLHL31Q9H511 634 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 SOX17Q9H6I2 414 aaPredicted RBP10.59□□□□□ -0.71
VRK3-210ENST00000596121 DNAJC11Q9NVH1 559 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 WWOXQ9NZC7 414 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 NUDT4Q9NZJ9 180 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 GPN3Q9UHW5 284 aaPredicted RBP10.59□□□□□ -0.71
VRK3-210ENST00000596121 POLHQ9Y253 713 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 KCNE2Q9Y6J6 123 aa10.59□□□□□ -0.71
VRK3-210ENST00000596121 SCN3AQ9NY46 2000 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 IGLV3-12A0A075B6K2 115 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 SGK494L7N484 410 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 TK2O00142 265 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 TXNDC9O14530 226 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 CCNT2O60583 730 aaKnown RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 KRT38O76015 456 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 ALBP02768 609 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 PDGFAP04085 211 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 SNRPAP09012 282 aaKnown RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 IL1RNP18510 177 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 FBLP22087 321 aaKnown RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 OTX2P32243 289 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 FOLR3P41439 243 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 CCR10P46092 362 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 CDC16Q13042 620 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 KCNAB2Q13303 367 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 DSG2Q14126 1118 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 FAM53BQ14153 422 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 DOC2AQ14183 400 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 SLBPQ14493 270 aaKnown RBP eCLIP10.58□□□□□ -0.72
VRK3-210ENST00000596121 SSPNQ14714 243 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 NAA30Q147X3 362 aaPredicted RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 RBBP5Q15291 538 aaKnown RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 TECRLQ5HYJ1 363 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 ATG9BQ674R7 924 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 PRMT9Q6P2P2 845 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 TIFABQ6ZNK6 161 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 CCDC91Q7Z6B0 441 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 MRGPREQ86SM8 312 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 PRSS58Q8IYP2 241 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 TCAIMQ8N3R3 496 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 ZNF843Q8N446 348 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 AFAP1L2Q8N4X5 818 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 STT3BQ8TCJ2 826 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 UBTD2Q8WUN7 234 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 WDR34Q96EX3 536 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 MMABQ96EY8 250 aaPredicted RBP10.58□□□□□ -0.72
VRK3-210ENST00000596121 C17orf62Q9BQA9 187 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 DRC3Q9H069 523 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 WDR54Q9H977 334 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 ZFP69BQ9UJL9 534 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 MAN2B2Q9Y2E5 1009 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 SPTA1P02549 2419 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 COL6A6A6NMZ7 2263 aa10.58□□□□□ -0.72
VRK3-210ENST00000596121 A0A1W2PPM1 405 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 OR2W5A6NFC9 320 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 SOCS6O14544 535 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 NDUFS4O43181 175 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 JRKO75564 520 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 WFS1O76024 890 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 IPO13O94829 963 aaKnown RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 SIX3O95343 332 aaPredicted RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 SLU7O95391 586 aaKnown RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 SERPIND1P05546 499 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 ZGLP1P0C6A0 271 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 SMIM10L1P0DMW3 83 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 PIM1P11309 404 aaPredicted RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 GNAZP19086 355 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 NR1D1P20393 614 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 CNTFP26441 200 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 GRK3P35626 688 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 AHRP35869 848 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 KLC1Q07866 573 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 PWP1Q13610 501 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 E2F2Q14209 437 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 SETDB1Q15047 1291 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 PDK4Q16654 411 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 PFKFB4Q16877 469 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 ERCC6LQ2NKX8 1250 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 FAM219BQ5XKK7 198 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 SH2D5Q6ZV89 423 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 APLFQ8IW19 511 aaPredicted RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 ZC3H7AQ8IWR0 971 aaKnown RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.57□□□□□ -0.72
VRK3-210ENST00000596121 CYP4X1Q8N118 509 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 SNX31Q8N9S9 440 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 CAMKVQ8NCB2 501 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 OR5T3Q8NGG3 340 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 NT5CQ8TCD5 201 aa10.57□□□□□ -0.72
VRK3-210ENST00000596121 AENQ8WTP8 325 aaKnown RBP10.57□□□□□ -0.72
VRK3-210ENST00000596121 THAP4Q8WY91 577 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms