RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 GRXCR2A6NFK2 248 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MAGEB17A8MXT2 336 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 M0R3G1 203 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 FANCGO15287 622 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 SUV39H1O43463 412 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 REM1O75628 298 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MTHFD1P11586 935 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 HK3P52790 923 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 EFR3AQ14156 821 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DUS1LQ6P1R4 473 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 ZBTB49Q6ZSB9 765 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PIAS4Q8N2W9 510 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 GPR151Q8TDV0 419 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MYEOVQ96EZ4 313 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 ARHGAP9Q9BRR9 750 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 RTKNQ9BST9 563 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MKRN2Q9H000 416 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 C8orf4Q9NR00 106 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 ACTR10Q9NZ32 417 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 OR6C2Q9NZP2 312 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DLGAP2Q9P1A6 1054 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 STOX2Q9P2F5 926 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 IFT80Q9P2H3 777 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 NFS1Q9Y697 457 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TNFRSF10CO14798 259 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TOP3BO95985 862 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 HSD3B1P14060 373 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 EFNA1P20827 205 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 FBLP22087 321 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 HSD3B2P26439 372 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MAGEA8P43361 318 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 ARSFP54793 590 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DOC2AQ14183 400 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 RFLNAQ6ZTI6 216 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TMEM156Q8N614 296 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 CNBD2Q96M20 576 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TMEM168Q9H0V1 697 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MAT2BQ9NZL9 334 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 UTS2RQ9UKP6 389 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 HCN2Q9UL51 889 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PRPF19Q9UMS4 504 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 KLHL20Q9Y2M5 609 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 SPEF1Q9Y4P9 236 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 CXorf51AA0A1B0GTR3 108 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 FAM234BA2RU67 622 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 KRT87PA6NCN2 255 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 ZNF860A6NHJ4 632 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 CAPN14A8MX76 684 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 C9JVG2 144 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TFPIP10646 304 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 RNH1P13489 461 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 ATP5A1P25705 553 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 CCKBRP32239 447 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 HSPA13P48723 471 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 ARHGAP19Q14CB8 494 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PAOXQ6QHF9 649 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 SDR16C5Q8N3Y7 309 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PNPLA1Q8N8W4 532 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DNAJB8Q8NHS0 232 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 LGR4Q9BXB1 951 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PRRG4Q9BZD6 226 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 AKTIPQ9H8T0 292 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PDFQ9HBH1 243 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 PRTFDC1Q9NRG1 225 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MAP1BP46821 2468 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 H3BN98 237 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 POLR1CO15160 346 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 COQ9O75208 318 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 KCNC1P48547 511 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 KHKP50053 298 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 CORO7P57737 925 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 KIAA1024LP59773 190 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 TRIM25Q14258 630 aaKnown RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 PCLAFQ15004 111 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DEFB134Q4QY38 66 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 FAM160A2Q8N612 972 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 METTL27Q8N6F8 245 aaPredicted RBP9.49□□□□□ -0.89
LIG3-216ENST00000593099 KCNC2Q96PR1 638 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 CMKLR1Q99788 373 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 EPB41L1Q9H4G0 881 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 DCLRE1BQ9H816 532 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 RAPGEFL1Q9UHV5 662 aa9.49□□□□□ -0.89
LIG3-216ENST00000593099 MROH6A6NGR9 719 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 GPR39O43194 453 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ITM2AO43736 263 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 CR2P20023 1033 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 TYSND1Q2T9J0 566 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 TMEM35AQ53FP2 167 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 TTLL10Q6ZVT0 673 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 CYP4V2Q6ZWL3 525 aaPredicted RBP9.48□□□□□ -0.89
LIG3-216ENST00000593099 TMEM150AQ86TG1 271 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 KCT2Q8NC54 265 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 OR52E1Q8NGJ3 308 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 PTCHD1Q96NR3 888 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ZFYVE21Q9BQ24 234 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 FNDC11Q9BVV2 318 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 SLC40A1Q9NP59 571 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 ZDHHC2Q9UIJ5 367 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 MAGEL2Q9UJ55 1249 aa9.48□□□□□ -0.89
LIG3-216ENST00000593099 WDR37Q9Y2I8 494 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms