RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CDH15P55291 814 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ROR2Q01974 943 aaKnown RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 THEMIS2Q5TEJ8 643 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ARMCX6Q7L4S7 300 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 COMMD6Q7Z4G1 85 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 VPS37AQ8NEZ2 397 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PJA1Q8NG27 643 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ADAMTS16Q8TE57 1224 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 RAD51AP1Q96B01 352 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 GDF15Q99988 308 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 SPATA9Q9BWV2 254 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 SPNS1Q9H2V7 528 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PTTG2Q9NZH5 202 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ATP6V1HQ9UI12 483 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 KELP23276 732 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 PIK3CBP42338 1070 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 VAC14Q08AM6 782 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 LRRC74AQ0VAA2 488 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 WSCD2Q2TBF2 565 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 PRAMEF14Q5SWL7 426 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 PRAMEF13Q5VWM6 474 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 LCTLQ6UWM7 567 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 EP400NLQ6ZTU2 488 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 LRRTM4Q86VH4 590 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 OR5AR1Q8NGP9 310 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 RBM4BQ9BQ04 359 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 RBM4Q9BWF3 364 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 CHST8Q9H2A9 424 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 TPT1P8Q9HAU6 139 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 SLC23A2Q9UGH3 650 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 CEPT1Q9Y6K0 416 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 K7EQS6 105 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 RNASET2O00584 256 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 GNGT2O14610 69 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 SEC24DO94855 1032 aaPredicted RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 PPIBP23284 216 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 TIE1P35590 1138 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 SEC13P55735 322 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 SH3BGRP55822 239 aaPredicted RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 DLX2Q07687 328 aaPredicted RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 AGERQ15109 404 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 OR5K1Q8NHB7 308 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 TBC1D20Q96BZ9 403 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 NMD3Q96D46 503 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 LGR4Q9BXB1 951 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 YTHDF1Q9BYJ9 559 aaKnown RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 BHLHE41Q9C0J9 482 aaPredicted RBP18.93■□□□□ 0.62
CLIP3-206ENST00000593074 CORO2BQ9UQ03 480 aa18.93■□□□□ 0.62
CLIP3-206ENST00000593074 CKAP5Q14008 2032 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 SEMG1P04279 462 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 CDH2P19022 906 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 DCTP40126 519 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 KIR2DL1P43626 348 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 EPS8Q12929 822 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 GAB1Q13480 694 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 LRRC23Q53EV4 343 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 C2orf27AQ580R0 203 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 MTSS1LQ765P7 747 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 ALDH16A1Q8IZ83 802 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 TFGQ92734 400 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 UBE2E3Q969T4 207 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 IL17FQ96PD4 163 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 THEGQ9P2T0 379 aa18.92■□□□□ 0.62
CLIP3-206ENST00000593074 DNMT3AQ9Y6K1 912 aaPredicted RBP18.92■□□□□ 0.62
CLIP3-206ENST00000593074 A0A1W2PP55 124 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 EFNA1P20827 205 aaPredicted RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 PHEXP78562 749 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 MEF2AQ02078 507 aaPredicted RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 LSAMPQ13449 338 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 PDE7AQ13946 482 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 VEZF1Q14119 521 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 RBBP5Q15291 538 aaKnown RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ZIK1Q3SY52 487 aaPredicted RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 METRNLQ641Q3 311 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 SPESP1Q6UW49 350 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 FAM129CQ86XR2 697 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ZDHHC21Q8IVQ6 265 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 HS3ST5Q8IZT8 346 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 METTL4Q8N3J2 472 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 SYNPOQ8N3V7 929 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 OR5K2Q8NHB8 316 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ZFP90Q8TF47 636 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 SNX19Q92543 992 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 MUS81Q96NY9 551 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 TOR3AQ9H497 397 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 REEP4Q9H6H4 257 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 SMURF2Q9HAU4 748 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 PRM3Q9NNZ6 103 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 MYNNQ9NPC7 610 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 IL1RAPQ9NPH3 570 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 RANBP2P49792 3224 aaKnown RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 CEP290O15078 2479 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ZNF682O95780 498 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 TGFB1P01137 390 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ABCB1P08183 1280 aaPredicted RBP18.91■□□□□ 0.62
CLIP3-206ENST00000593074 KDELR2P33947 212 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 BIRC2Q13490 618 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ARHGAP19Q14CB8 494 aa18.91■□□□□ 0.62
CLIP3-206ENST00000593074 ZNF385BQ569K4 471 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms