RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 MATN1P21941 496 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CRHBPP24387 322 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PSMB4P28070 264 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 IL12AP29459 219 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ARL4AP40617 200 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 GPD2P43304 727 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 RABIFP47224 123 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ALDH3A2P51648 485 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ARSDP51689 593 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TKTL1P51854 596 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NAGLUP54802 743 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ADPRHP54922 357 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 EEFSECP57772 596 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 SESN2P58004 480 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 LILRA4P59901 499 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 RAB10P61026 200 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ADAM8P78325 824 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PHC1P78364 1004 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MVKQ03426 396 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CHAF1BQ13112 559 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ITGADQ13349 1161 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 IL18R1Q13478 541 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 KRR1Q13601 381 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 DAG1Q14118 895 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SELPLGQ14242 412 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PAFAH1B3Q15102 231 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 DLG2Q15700 870 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NFE2Q16621 373 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 CA9Q16790 459 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DGUOKQ16854 277 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CDO1Q16878 200 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ZNF181Q2M3W8 571 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 C15orf59Q2T9L4 293 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 AGKQ53H12 422 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CYBRD1Q53TN4 286 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PPP6R3Q5H9R7 873 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 TECRLQ5HYJ1 363 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TSTD2Q5T7W7 516 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ATAD3BQ5T9A4 648 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TTC23Q5W5X9 447 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 LCLAT1Q6UWP7 414 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MPZL3Q6UWV2 235 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 LINGO4Q6UY18 593 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DNAJC14Q6Y2X3 702 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 SLC16A12Q6ZSM3 486 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 USP30Q70CQ3 517 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SLC26A9Q7LBE3 791 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 STRADAQ7RTN6 431 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PTAR1Q7Z6K3 402 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 MRGPRGQ86SM5 289 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 LINC00523Q86TU6 105 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 IQCHQ86VS3 1027 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TMEM200AQ86VY9 491 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ARMC8Q8IUR7 673 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SPATA2LQ8IUW3 424 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 SLC22A9Q8IVM8 553 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DDIASQ8IXT1 998 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 SLC35F3Q8IY50 421 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CPNE9Q8IYJ1 553 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 OFCC1Q8IZS5 231 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CENPLQ8N0S6 344 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 C8orf59Q8N0T1 100 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 SCML4Q8N228 414 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PCDH20Q8N6Y1 951 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 Q8N9G6 341 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 TRPV3Q8NET8 790 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 GRIN3AQ8TCU5 1115 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 AGR3Q8TD06 166 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CALML6Q8TD86 181 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 LMX1AQ8TE12 382 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 CANT1Q8WVQ1 401 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 RASSF5Q8WWW0 418 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ATL1Q8WXF7 558 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 HDAC10Q969S8 669 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TMEM159Q96B96 161 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ZNF486Q96H40 463 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 SCYL1Q96KG9 808 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MARK4Q96L34 752 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 PPP1R2P1Q96PQ5 205 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MRPL57Q9BQC6 102 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 FEM1AQ9BSK4 669 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ELOVL4Q9GZR5 314 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 HOXD1Q9GZZ0 328 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 NAA50Q9GZZ1 169 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 PCDHAC1Q9H158 963 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ING2Q9H160 280 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MUC3BQ9H195 1237 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 MTG2Q9H4K7 406 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DHX35Q9H5Z1 703 aaKnown RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 ATP13A3Q9H7F0 1226 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 FANCEQ9HB96 536 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 FZD3Q9NPG1 666 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ZNF358Q9NW07 568 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 TMEM45AQ9NWC5 275 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 ELOVL2Q9NXB9 296 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 GDAP2Q9NXN4 497 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 USE1Q9NZ43 259 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 DTLQ9NZJ0 730 aa4.02□□□□□ -1.77
LIG3-211ENST00000588713 AKAP7Q9P0M2 348 aaPredicted RBP4.02□□□□□ -1.77
LIG3-211ENST00000588713 GULP1Q9UBP9 304 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms