RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 PCNX2A6NKB5 2137 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 USP34Q70CQ2 3546 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 A0A1B0GTW7 788 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 LNP1A1A4G5 178 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 DCDC2BA2VCK2 349 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 POM121BA6NF01 834 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 C4orf47A7E2U8 309 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 METTL12A8MUP2 240 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ISM1B1AKI9 464 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 LATO43561 262 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 GDF9O60383 454 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ERN1O75460 977 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 SORBS2O94875 1100 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 TGFB1P01137 390 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SERPIND1P05546 499 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 MTHFD1P11586 935 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 HSD17B1P14061 328 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 CD1EP15812 388 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 HRH2P25021 359 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 IL12AP29459 219 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SHMT2P34897 504 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 GCKP35557 465 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ACTR1BP42025 376 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 KIR3DL1P43629 444 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 BLKP51451 505 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ACTR1AP61163 376 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ABATP80404 500 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 MRPS22P82650 360 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 LIPEQ05469 1076 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 BIRC2Q13490 618 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PTGR1Q14914 329 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PLCL1Q15111 1095 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 TLR1Q15399 786 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SF1Q15637 639 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 RPE65Q16518 533 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ZXDCQ2QGD7 858 aaPredicted RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 PAGE3Q5JUK9 113 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 CATSPEREQ5SY80 951 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 CPTPQ5TA50 214 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PEAR1Q5VY43 1037 aaPredicted RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 NANOGP8Q6NSW7 305 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 MSANTD1Q6ZTZ1 278 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 RETREG3Q86VR2 466 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SLC15A3Q8IY34 581 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 LAS2Q8IYD9 372 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 C1orf52Q8N6N3 182 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 FAM156AQ8NDB6 213 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 OR2L8Q8NGY9 312 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 LCN9Q8WX39 176 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 DNAJC9Q8WXX5 260 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 OR1E3Q8WZA6 343 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 GFM2Q969S9 779 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 TSACCQ96A04 125 aaPredicted RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 ZUFSPQ96AP4 578 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SLC22A18Q96BI1 424 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PPWD1Q96BP3 646 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 WDR34Q96EX3 536 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 TEX37Q96LM6 180 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PPM1MQ96MI6 270 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 CGREF1Q99674 301 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SLC39A3Q9BRY0 314 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 EBPLQ9BY08 206 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 GSDMCQ9BYG8 508 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 MIR1-1HGQ9H1L0 117 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 SMOC1Q9H4F8 434 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 ALG2Q9H553 416 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 NANOGQ9H9S0 305 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PRDM8Q9NQV8 689 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 AASDHPPTQ9NRN7 309 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 GEMIN8Q9NWZ8 242 aaKnown RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 C6orf203Q9P0P8 240 aaPredicted RBP8.93□□□□□ -0.98
SS18-220ENST00000582092 SPASTQ9UBP0 616 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 PLEKHM1Q9Y4G2 1056 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 CFAP54Q96N23 3096 aa8.93□□□□□ -0.98
SS18-220ENST00000582092 NPIPB8E9PQR5 432 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 H7BY64 318 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 ARHGAP33O14559 1287 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 RFXANKO14593 260 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 SCAMP1O15126 338 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 BCAT2O15382 392 aaPredicted RBP8.92□□□□□ -0.98
SS18-220ENST00000582092 OR1F1O43749 312 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 PCDH7O60245 1069 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 CPSF4O95639 269 aaKnown RBP8.92□□□□□ -0.98
SS18-220ENST00000582092 VIPP01282 170 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 C7P10643 843 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 ENGP17813 658 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 SDC1P18827 310 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 SLC6A2P23975 617 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 PSMA4P25789 261 aaKnown RBP8.92□□□□□ -0.98
SS18-220ENST00000582092 TIA1P31483 386 aaKnown RBP eCLIP8.92□□□□□ -0.98
SS18-220ENST00000582092 TRPC1P48995 793 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 PPM1FP49593 454 aaPredicted RBP8.92□□□□□ -0.98
SS18-220ENST00000582092 CTBSQ01459 385 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 MEF2AQ02078 507 aaPredicted RBP8.92□□□□□ -0.98
SS18-220ENST00000582092 TGM3Q08188 693 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 CLCA4Q14CN2 919 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 KIAA0040Q15053 153 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 TRIP10Q15642 601 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 SPANXN4Q5MJ08 99 aa8.92□□□□□ -0.98
SS18-220ENST00000582092 ICE2Q659A1 982 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms