RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 OR51B5Q9H339 312 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 SIRT5Q9NXA8 310 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 EPHA6Q9UF33 1036 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PCDHGA4Q9Y5G9 962 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 PI4KAP42356 2102 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 TMEM131Q92545 1883 aa13.1□□□□□ -0.31
CCDC40-209ENST00000573474 IGHV1OR21-1A0A087WYE8 117 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 LOC100653049A0A140TA62 436 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 NRP2O60462 931 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SH3BGRLO75368 114 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 KRT34O76011 436 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SEMA3DO95025 777 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 TBX6O95947 436 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SERPIND1P05546 499 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SNRPB2P08579 225 aaKnown RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 CDH3P22223 829 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PPM1FP49593 454 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 ATXN3P54252 364 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 OR1D5P58170 312 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PPP1CAP62136 330 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 GPLD1P80108 840 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SUZ12Q15022 739 aaKnown RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 CCDC6Q16204 474 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 TMEM35AQ53FP2 167 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 GALNT18Q6P9A2 607 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SNX32Q86XE0 403 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 METTL4Q8N3J2 472 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 MINDY1Q8N5J2 469 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 EID2Q8N6I1 236 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 C1orf52Q8N6N3 182 aaKnown RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 POU5F2Q8N7G0 328 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 OR2I1PQ8NGU4 316 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 NCSTNQ92542 709 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 C11orf24Q96F05 449 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 ZDHHC12Q96GR4 267 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PPM1MQ96MI6 270 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PRRX2Q99811 253 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 CENPKQ9BS16 269 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 MRPL1Q9BYD6 325 aaKnown RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 SMOC1Q9H4F8 434 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 ACTR5Q9H9F9 607 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-209ENST00000573474 C1GALT1Q9NS00 363 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 EVA1BQ9NVM1 165 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 CCDC167Q9P0B6 97 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PILRAQ9UKJ1 303 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 PCDH15Q96QU1 1955 aa13.09□□□□□ -0.31
CCDC40-209ENST00000573474 FAM234BA2RU67 622 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 ANKRD28O15084 1053 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 CAPN5O15484 640 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-209ENST00000573474 B4GAT1O43505 415 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 DUX1O43812 170 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 RETP07949 1114 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 ZNF883P0CG24 379 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 MYF5P13349 255 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 HOXB3P14651 431 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-209ENST00000573474 PVRP15151 417 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 RAP1GDS1P52306 607 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 NCALDP61601 193 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 UFM1P61960 85 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 CYP4F3Q08477 520 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 STX5Q13190 355 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 NKAIN2Q5VXU1 208 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 GK5Q6ZS86 529 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 COMMD6Q7Z4G1 85 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 FUNDC1Q8IVP5 155 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 Q8N9G6 341 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-209ENST00000573474 OR9I1Q8NGQ6 314 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 PROKR1Q8TCW9 393 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 TSPEARQ8WU66 669 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 SLC13A3Q8WWT9 602 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 CCDC74AQ96AQ1 378 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 RGMAQ96B86 450 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 QRFPRQ96P65 431 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 TRAPPC9Q96Q05 1148 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 F2RL3Q96RI0 385 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 CD180Q99467 661 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 ZBTB18Q99592 522 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 ZFYVE21Q9BQ24 234 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 RTKNQ9BST9 563 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 SLC25A23Q9BV35 468 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 DPY30Q9C005 99 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 KLHL25Q9H0H3 589 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 BAIAP2L1Q9UHR4 511 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 DLGAP4Q9Y2H0 992 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 PCDHGB2Q9Y5G2 931 aa13.08□□□□□ -0.32
CCDC40-209ENST00000573474 LY6G6EA0A0G2JKS1 128 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 A0A0J9YVX5 310 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 LRIT2A6NDA9 550 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 TLCD2A6NGC4 264 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SLC9B1P1A6NJY1 282 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 B2RBV5 119 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SAP18O00422 153 aaKnown RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 NDUFS4O43181 175 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 PCDH7O60245 1069 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 CTSVO60911 334 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ANXA4P09525 319 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-209ENST00000573474 CD1EP15812 388 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 ST6GAL1P15907 406 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 SDC1P18827 310 aa13.07□□□□□ -0.32
CCDC40-209ENST00000573474 JAK1P23458 1154 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms