RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PLCD4Q9BRC7 762 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 TUBB6Q9BUF5 446 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 YIPF2Q9BWQ6 316 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 ISCUQ9H1K1 167 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 DEFB127Q9H1M4 99 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 DHX35Q9H5Z1 703 aaKnown RBP6.48□□□□□ -1.37
CHD3-213ENST00000571249 ESRP2Q9H6T0 727 aaKnown RBP6.48□□□□□ -1.37
CHD3-213ENST00000571249 KCNK13Q9HB14 408 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 RAD18Q9NS91 495 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 C6orf203Q9P0P8 240 aaPredicted RBP6.48□□□□□ -1.37
CHD3-213ENST00000571249 RNF14Q9UBS8 474 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 RAB21Q9UL25 225 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 RPL26L1Q9UNX3 145 aaKnown RBP6.48□□□□□ -1.37
CHD3-213ENST00000571249 HYOU1Q9Y4L1 999 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 HEBP2Q9Y5Z4 205 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 SCN2AQ99250 2005 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 RYR2Q92736 4967 aa6.48□□□□□ -1.37
CHD3-213ENST00000571249 MALRD1Q5VYJ5 2156 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ALPK2Q86TB3 2170 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 IGHV3-20A0A0C4DH32 117 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 A0A0J9YY10 115 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 MACROD2A1Z1Q3 448 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CTAGE15A4D2H0 777 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 MGAT4DA6NG13 374 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ANKRD66B4E2M5 251 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 FFAR3O14843 346 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 TMPRSS2O15393 492 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 GPR42O15529 346 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ATP8B1O43520 1251 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 SEC24DO94855 1032 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 HTR3BO95264 441 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 LSM8O95777 96 aaKnown RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 PIRTP0C851 137 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CTAGE8P0CG41 777 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 TMIGD3P0DMS9 266 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 CA4P22748 312 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ASCL1P50553 236 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ZNF143P52747 638 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 BPIFB4P59827 614 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 NOMO3P69849 1222 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CKAP4Q07065 602 aaKnown RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 PRKG2Q13237 762 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 GRM7Q14831 915 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 BTBD16Q32M84 506 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 YOD1Q5VVQ6 348 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 VASNQ6EMK4 673 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 H3F3CQ6NXT2 135 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 DET1Q7L5Y6 550 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 TMC3Q7Z5M5 1100 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CTAGE6Q86UF2 777 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CTAGE4Q8IX94 777 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CFAP206Q8IYR0 622 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 MMGT1Q8N4V1 131 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 LILRA3Q8N6C8 439 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 TTC29Q8NA56 475 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 NAT14Q8WUY8 206 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 GAL3ST3Q96A11 431 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 AGPAT1Q99943 283 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 C11orf70Q9BRQ4 267 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 CNPPD1Q9BV87 410 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 PACSIN1Q9BY11 444 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 POLR1EQ9GZS1 481 aaKnown RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.47□□□□□ -1.37
CHD3-213ENST00000571249 SPHK1Q9NYA1 384 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 FAM53CQ9NYF3 392 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 ZFATQ9P243 1243 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 NFKBIL1Q9UBC1 381 aaPredicted RBP6.47□□□□□ -1.37
CHD3-213ENST00000571249 B4GALT7Q9UBV7 327 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 PCDHB10Q9UN67 800 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 AP4E1Q9UPM8 1137 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 KLHL20Q9Y2M5 609 aa6.47□□□□□ -1.37
CHD3-213ENST00000571249 KIAA1549Q9HCM3 1950 aa6.46□□□□□ -1.37
CHD3-213ENST00000571249 IGLV3-12A0A075B6K2 115 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 GRID2IPA4D2P6 1211 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 CCDC151A5D8V7 595 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FIGNL2A6NMB9 653 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 MED26O95402 600 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 MMEP08473 750 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 CHRNB2P17787 502 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FPR1P21462 350 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FBLP22087 321 aaKnown RBP6.46□□□□□ -1.38
CHD3-213ENST00000571249 MMP8P22894 467 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 CDH6P55285 790 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 SUMO1P63165 101 aaKnown RBP6.46□□□□□ -1.38
CHD3-213ENST00000571249 CDR2Q01850 454 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 NIPAL4Q0D2K0 466 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 TAZQ16635 292 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FAM214AQ32MH5 1076 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 GRAMD1BQ3KR37 738 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FBXL19-AS1Q494R0 122 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 PPP6R3Q5H9R7 873 aaPredicted RBP6.46□□□□□ -1.38
CHD3-213ENST00000571249 C1orf185Q5T7R7 199 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 RIPPLY2Q5TAB7 128 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 WDR93Q6P2C0 686 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 FBXO42Q6P3S6 717 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 PAOXQ6QHF9 649 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 TMEM205Q6UW68 189 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 TREML4Q6UXN2 200 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 ZNF227Q86WZ6 799 aa6.46□□□□□ -1.38
CHD3-213ENST00000571249 ZNF677Q86XU0 584 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms