RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 BAHD1Q8TBE0 780 aaPredicted RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 ZUFSPQ96AP4 578 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 WDR34Q96EX3 536 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 THOC1Q96FV9 657 aaKnown RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 SEC16BQ96JE7 1060 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 PPP1R36Q96LQ0 422 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 CCDC74BQ96LY2 380 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 TMEM74Q96NL1 305 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 HBEGFQ99075 208 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 MAP3K3Q99759 626 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 NUDT22Q9BRQ3 303 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 NUF2Q9BZD4 464 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 STRADBQ9C0K7 418 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 EPN3Q9H201 632 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 RABEP2Q9H5N1 569 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 COPS7BQ9H9Q2 264 aaPredicted RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 NMRK1Q9NWW6 199 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 ZDHHC2Q9UIJ5 367 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 HAO1Q9UJM8 370 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 DCTN4Q9UJW0 460 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 ATXN7L1Q9ULK2 861 aaPredicted RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 ZNF490Q9ULM2 529 aaPredicted RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 SLC12A4Q9UP95 1085 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 APOBEC2Q9Y235 224 aaKnown RBP6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 KLHL20Q9Y2M5 609 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 TIMM22Q9Y584 194 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 PCDHGA1Q9Y5H4 931 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 USH1CQ9Y6N9 552 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 SPAG17Q6Q759 2223 aa6.31□□□□□ -1.4
CTDNEP1-204ENST00000570484 ZNF318Q5VUA4 2279 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 NCOR1O75376 2440 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 KCNE1BA0A087WTH5 132 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 IGKV1-8A0A0C4DH67 115 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 OR2A25A4D2G3 310 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 SLC9B1P1A6NJY1 282 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TMX2-CTNND1H3BSU7 103 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TXNDC9O14530 226 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 B4GAT1O43505 415 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 KIF1CO43896 1103 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PRICKLE3O43900 615 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CBFA2T3O75081 653 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 VPS4BO75351 444 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 WFS1O76024 890 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MYO1DO94832 1006 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TGDSO95455 350 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 C9P02748 559 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 EIF2S1P05198 315 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 FGF4P08620 206 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ANKRD34CP0C6C1 535 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 LINC00032P0C843 101 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 THRAP10827 490 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CD22P20273 847 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MSX1P28360 303 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MAPK1P28482 360 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ARRB2P32121 409 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CSTF2P33240 577 aaKnown RBP eCLIP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 AHRP35869 848 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 BCL6P41182 706 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PIK3CBP42338 1070 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CASP2P42575 452 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 SEPHS1P49903 392 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 HTR6P50406 440 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 NOVA1P51513 510 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ARFIP2P53365 341 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 SEC24CP53992 1094 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 INHBCP55103 352 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 FOXA1P55317 472 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 STX1BP61266 288 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 STXBP1P61764 594 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 RPL38P63173 70 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ACY1Q03154 408 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 BTKQ06187 659 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PCDH1Q08174 1060 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MAD2L1Q13257 205 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TUBB3Q13509 450 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TRA2AQ13595 282 aaKnown RBP eCLIP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 SPDYAQ5MJ70 313 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TCHHL1Q5QJ38 904 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 GKAP1Q5VSY0 366 aaPredicted RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CES4AQ5XG92 561 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ZNF425Q6IV72 752 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TRIM40Q6P9F5 258 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CHSY3Q70JA7 882 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ABHD13Q7L211 337 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ASPGQ86U10 573 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PAQR7Q86WK9 346 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PLD3Q8IV08 490 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 LAS2Q8IYD9 372 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 GPR135Q8IZ08 494 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CSNK1A1LQ8N752 337 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 ANKS4BQ8N8V4 417 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MFSD9Q8NBP5 474 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CAMKVQ8NCB2 501 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TRPV3Q8NET8 790 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 OR7G3Q8NG95 312 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 FLVCR1-AS1Q8TAF5 88 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 TUBGCP3Q96CW5 907 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 MTFMTQ96DP5 389 aaKnown RBP6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 CMTM7Q96FZ5 175 aa6.3□□□□□ -1.4
CTDNEP1-204ENST00000570484 PPP3R2Q96LZ3 170 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms