RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SLC2A4P14672 509 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZNF8P17098 575 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 CKMT2P17540 419 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 NDUFB7P17568 137 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GPD1P21695 349 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 WARSP23381 471 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 CNTFP26441 200 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 G0S2P27469 103 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PEX2P28328 305 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GABRB3P28472 473 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TACR3P29371 465 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CRABP1P29762 137 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SLC7A1P30825 629 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CYLC1P35663 651 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 GPX4P36969 197 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 CD79BP40259 229 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PPP3CCP48454 512 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ALDH7A1P49419 539 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 TOB1P50616 345 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZNF134P52741 427 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PLK1P53350 603 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 UCP3P55916 312 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 EIF3EP60228 445 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 ESRRGP62508 458 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 HTD2P86397 168 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TNFAIP2Q03169 654 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PUDPQ08623 228 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 BNIP2Q12982 314 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GRIK2Q13002 908 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 BMPR2Q13873 1038 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GTF2H3Q13889 308 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GRB7Q14451 532 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SMCO1Q147U7 214 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MLC1Q15049 377 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 POLD3Q15054 466 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 CHRNA6Q15825 494 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 AASDHQ4L235 1098 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 EPC2Q52LR7 807 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PLAC9Q5JTB6 97 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 AGAP6Q5VW22 663 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 LIPNQ5VXI9 398 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZNF772Q68DY9 489 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 KIAA0895LQ68EN5 471 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RAET1GQ6H3X3 334 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 JMJD6Q6NYC1 403 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZCCHC12Q6PEW1 402 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 KLHL24Q6TFL4 600 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PTCHD4Q6ZW05 846 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CREB3L2Q70SY1 520 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 SSX9Q7RTT3 188 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 NT5DC3Q86UY8 548 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 FAM160B2Q86V87 743 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MON1AQ86VX9 555 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ANKRD46Q86W74 232 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZNF575Q86XF7 245 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PRIMA1Q86XR5 153 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PLCZ1Q86YW0 608 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 LIX1LQ8IVB5 337 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CHERPQ8IWX8 916 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 MCEMP1Q8IX19 187 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CTAGE3PQ8IX95 158 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TCEAL8Q8IYN2 117 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MCOLN2Q8IZK6 566 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CENPLQ8N0S6 344 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 RBFAQ8N0V3 343 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 NAGSQ8N159 534 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 THEM5Q8N1Q8 247 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PARP8Q8N3A8 854 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TRAM1L1Q8N609 369 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 CCDC185Q8N715 623 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ATG16L2Q8NAA4 619 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RBM15BQ8NDT2 890 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 OR8J2Q8NGG1 315 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 OR6F1Q8NGZ6 308 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MOSPD2Q8NHP6 518 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PSMA8Q8TAA3 256 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZFAND1Q8TCF1 268 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 PNPT1Q8TCS8 783 aaKnown RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 BLOC1S5Q8TDH9 187 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ADAMTS18Q8TE60 1221 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GDPD5Q8WTR4 605 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 DNAJA4Q8WW22 397 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 SLC5A11Q8WWX8 675 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RFFLQ8WZ73 363 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ESR2Q92731 530 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 GTF2H4Q92759 462 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 MAP4K1Q92918 833 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RFT1Q96AA3 541 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 C18orf25Q96B23 403 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 PTERQ96BW5 349 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 RHBDF1Q96CC6 855 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 TIFAQ96CG3 184 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 DCUN1D1Q96GG9 259 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZNF764Q96H86 408 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 TMEM41AQ96HV5 264 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 ZFYVE19Q96K21 471 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 FAM71F1Q96KD3 344 aaPredicted RBP3.15□□□□□ -1.91
VPS35-208ENST00000568612 LRFN5Q96NI6 719 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 AGAP4Q96P64 663 aa3.15□□□□□ -1.91
VPS35-208ENST00000568612 OR1F2PQ96R84 312 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms