RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 EFHD1Q9BUP0 239 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 SPRY4Q9C004 299 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 PADI1Q9ULC6 663 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 TNPO3Q9Y5L0 923 aaKnown RBP16.46■□□□□ 0.23
CLN3-217ENST00000565354 PRRC2CQ9Y520 2896 aaKnown RBP16.45■□□□□ 0.22
CLN3-217ENST00000565354 LOC105369274A0A096LPK9 316 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 LOC102723532A0A0G2JNH3 316 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 K7EPI3 171 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 COPEO14579 308 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 OR1F1O43749 312 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 CTSBP07858 339 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 MTHFD2P13995 350 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 ALAS2P22557 587 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 CCT5P48643 541 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 AGTR2P50052 363 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 RELAQ04206 551 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 ABHD18Q0P651 414 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 RBBP5Q15291 538 aaKnown RBP16.45■□□□□ 0.22
CLN3-217ENST00000565354 DEFB109BQ30KR1 87 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 C1orf189Q5VU69 101 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 HIST2H2BCQ6DN03 193 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 OR4N4Q8N0Y3 316 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 ABHD11Q8NFV4 315 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 UBTD2Q8WUN7 234 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 PHF21BQ96EK2 531 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 IQCGQ9H095 443 aaKnown RBP16.45■□□□□ 0.22
CLN3-217ENST00000565354 LHX9Q9NQ69 397 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 CUTCQ9NTM9 273 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 TMEM216Q9P0N5 145 aa16.45■□□□□ 0.22
CLN3-217ENST00000565354 LOC101059948A0A1B0GTJ6 334 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 FOXO6A8MYZ6 492 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 SERPIND1P05546 499 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 C1GALT1C1LP0DN25 315 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 EPB42P16452 691 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 ARL1P40616 181 aaPredicted RBP16.44■□□□□ 0.22
CLN3-217ENST00000565354 MC1RQ01726 317 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 GPS2Q13227 327 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 XKR6Q5GH73 641 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 YOD1Q5VVQ6 348 aaPredicted RBP16.44■□□□□ 0.22
CLN3-217ENST00000565354 RHBDD2Q6NTF9 364 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 C16orf46Q6P387 395 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 TTLL10Q6ZVT0 673 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 DSELQ8IZU8 1212 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 C4orf33Q8N1A6 199 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 KRT78Q8N1N4 520 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 TEX9Q8N6V9 391 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 CCDC63Q8NA47 563 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 CAMKVQ8NCB2 501 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 LRFN5Q96NI6 719 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 OR2A5Q96R48 311 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 RUFY1Q96T51 708 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 CENPHQ9H3R5 247 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 DHCR7Q9UBM7 475 aaKnown RBP16.44■□□□□ 0.22
CLN3-217ENST00000565354 PLEKHB1Q9UF11 243 aaPredicted RBP16.44■□□□□ 0.22
CLN3-217ENST00000565354 LGALS13Q9UHV8 139 aa16.44■□□□□ 0.22
CLN3-217ENST00000565354 TRBC2A0A5B9 178 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 HYKKA2RU49 373 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 C9J4A7 227 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 MEN1O00255 615 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 RGS16O15492 202 aaPredicted RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 KLK8O60259 260 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 SLC35G6P0C7Q6 338 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 KRT4P19013 534 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 TCN2P20062 427 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 VARSP26640 1264 aaKnown RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 EEF1DP29692 281 aaKnown RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 DLSTP36957 453 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 BCL6P41182 706 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 STAT5AP42229 794 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 PIK3CGP48736 1102 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 REEP5Q00765 189 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 IRF8Q02556 426 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 SLBPQ14493 270 aaKnown RBP eCLIP16.43■□□□□ 0.22
CLN3-217ENST00000565354 HIST2H2ACQ16777 129 aaPredicted RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 NDUFA9Q16795 377 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 MUM1Q2TAK8 710 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 CRTC2Q53ET0 693 aaPredicted RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 PAGE2BQ5JRK9 111 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 CEP85LQ5SZL2 805 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ATG9BQ674R7 924 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 HIST2H2AA3Q6FI13 130 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 CROCCP2Q86T23 111 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ASPGQ86U10 573 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 MFSD9Q8NBP5 474 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 SLC38A9Q8NBW4 561 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 OR4K1Q8NGD4 311 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 PROKR1Q8TCW9 393 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 STARD8Q92502 1023 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ATP6V1E2Q96A05 226 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ZNF285Q96NJ3 590 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ZIM3Q96PE6 472 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 TMEM109Q9BVC6 243 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ARGLU1Q9NWB6 273 aaPredicted RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 GPN3Q9UHW5 284 aaPredicted RBP16.43■□□□□ 0.22
CLN3-217ENST00000565354 CROTQ9UKG9 612 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 GRID1Q9ULK0 1009 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 TP53TG5Q9Y2B4 290 aa16.43■□□□□ 0.22
CLN3-217ENST00000565354 ESPL1Q14674 2120 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 A0A1B0GX78 115 aa16.42■□□□□ 0.22
CLN3-217ENST00000565354 FITM1A5D6W6 292 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms