RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 MBOAT1Q6ZNC8 495 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 PDSS2Q86YH6 399 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 CRLF3Q8IUI8 442 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 CAMKVQ8NCB2 501 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 SERPINB12Q96P63 405 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 ATG10Q9H0Y0 220 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 TSPAN10Q9H1Z9 355 aaPredicted RBP15.9■□□□□ 0.14
CLN3-211ENST00000564091 ANKHQ9HCJ1 492 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 TINAGQ9UJW2 476 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 FBXO5Q9UKT4 447 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 MAD1L1Q9Y6D9 718 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 POLQO75417 2590 aa15.9■□□□□ 0.14
CLN3-211ENST00000564091 NUP210LQ5VU65 1888 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 ZNF860A6NHJ4 632 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 TTI1O43156 1089 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 CYC1P08574 325 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 MLNP12872 115 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 CASP6P55212 293 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 ADORA2A-AS1P86434 159 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 NAE1Q13564 534 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 OR1C1Q15619 314 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 HSP90AA5PQ58FG0 334 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 MTFR2Q6P444 385 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 ASPGQ86U10 573 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 SLC26A11Q86WA9 606 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 MDS2Q8NDY4 140 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 MCUQ8NE86 351 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 SLC13A3Q8WWT9 602 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 TM4SF19Q96DZ7 209 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 THAP11Q96EK4 314 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 NDNQ99608 321 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 AARSD1Q9BTE6 412 aaKnown RBP15.89■□□□□ 0.13
CLN3-211ENST00000564091 XAB2Q9HCS7 855 aaKnown RBP15.89■□□□□ 0.13
CLN3-211ENST00000564091 CHST11Q9NPF2 352 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 PDE10AQ9Y233 779 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 NAALAD2Q9Y3Q0 740 aa15.89■□□□□ 0.13
CLN3-211ENST00000564091 NPIPA5E9PKD4 350 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 ZNHIT1O43257 154 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 DNAJB6O75190 326 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 ESRRAP11474 423 aaPredicted RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 COX6B1P14854 86 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 AGTR2P50052 363 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 TIAL1Q01085 375 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-211ENST00000564091 ACTN3Q08043 901 aaPredicted RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 ABRAXAS2Q15018 415 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 NSDHLQ15738 373 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 EXT1Q16394 746 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 MEP1AQ16819 746 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 SFT2D3Q587I9 215 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 CAPN13Q6MZZ7 669 aaPredicted RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 PAPD4Q6PIY7 484 aaKnown RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 AGTRAPQ6RW13 159 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 C17orf64Q86WR6 236 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 OR5T3Q8NGG3 340 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 M1APQ8TC57 530 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 EEF1AKMT1Q8WVE0 214 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 TSLPQ969D9 159 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 MAGOHBQ96A72 148 aaKnown RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 PEX11GQ96HA9 241 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 UTP23Q9BRU9 249 aaKnown RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 PCBD2Q9H0N5 130 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 MMP25Q9NPA2 562 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 IARS2Q9NSE4 1012 aaKnown RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 TRMT6Q9UJA5 497 aaKnown RBP15.88■□□□□ 0.13
CLN3-211ENST00000564091 NPIPA1Q9UND3 350 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 COMMD10Q9Y6G5 202 aa15.88■□□□□ 0.13
CLN3-211ENST00000564091 GABRR3A8MPY1 467 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 GOLGA6L6A8MZA4 724 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 CDH1P12830 882 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 RHAGQ02094 409 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 ALDH6A1Q02252 535 aaKnown RBP15.87■□□□□ 0.13
CLN3-211ENST00000564091 OC90Q02509 493 aaPredicted RBP15.87■□□□□ 0.13
CLN3-211ENST00000564091 CDSNQ15517 529 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 ZXDCQ2QGD7 858 aaPredicted RBP15.87■□□□□ 0.13
CLN3-211ENST00000564091 ZNF662Q6ZS27 426 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 GDF7Q7Z4P5 450 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 PCGF5Q86SE9 256 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 PLPP5Q8NEB5 264 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 TRIM58Q8NG06 486 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 ADAMTS18Q8TE60 1221 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 SCMH1Q96GD3 660 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 MAGED4Q96JG8 741 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 SIGLEC10Q96LC7 697 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 GPR137Q96N19 417 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 LPAR4Q99677 370 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 LANCL2Q9NS86 450 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 PCDHGB6Q9Y5F9 930 aa15.87■□□□□ 0.13
CLN3-211ENST00000564091 CCDC168Q8NDH2 2452 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 ASPDHA6ND91 283 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 EIF3FO00303 357 aaPredicted RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 B3GALT4O96024 378 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 CCDC175P0C221 793 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 CD46P15529 392 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 NPPBP16860 134 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 EEF1DP29692 281 aaKnown RBP15.86■□□□□ 0.13
CLN3-211ENST00000564091 PTGER4P35408 488 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 GRK3P35626 688 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 MAGEA3P43357 314 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 OLR1P78380 273 aa15.86■□□□□ 0.13
CLN3-211ENST00000564091 MEF2AQ02078 507 aaPredicted RBP15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms