RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RNF125Q96EQ8 232 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CCDC51Q96ER9 411 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 APIPQ96GX9 242 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ZNF48Q96MX3 618 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 LRFN5Q96NI6 719 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CYP2S1Q96SQ9 504 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SEMA3CQ99985 751 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 C17orf62Q9BQA9 187 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SEC22CQ9BRL7 303 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 C11orf70Q9BRQ4 267 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TEKT3Q9BXF9 490 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 KRTAP1-5Q9BYS1 174 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 NLNQ9BYT8 704 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 NAT10Q9H0A0 1025 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 DDX47Q9H0S4 455 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 C11orf49Q9H6J7 331 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SAYSD1Q9NPB0 183 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CHRAC1Q9NRG0 131 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PNO1Q9NRX1 252 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 PNPLA3Q9NST1 481 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 THUMPD1Q9NXG2 353 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 GDE1Q9NZC3 331 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 GRHL1Q9NZI5 618 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 IL20RAQ9UHF4 553 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 CLEC2DQ9UHP7 191 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ADAM28Q9UKQ2 775 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 INTS6Q9UL03 887 aaKnown RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 DNPEPQ9ULA0 475 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 RPH3ALQ9UNE2 315 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PSMD13Q9UNM6 376 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 HPSEQ9Y251 543 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 TBC1D30Q9Y2I9 924 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 ARL2BPQ9Y2Y0 163 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MFHAS1Q9Y4C4 1052 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 PCDHAC2Q9Y5I4 1007 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 LYVE1Q9Y5Y7 322 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 U3KQV3 271 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 SMARCA4P51532 1647 aa4.92□□□□□ -1.62
VPS35-205ENST00000563984 MN1Q10571 1320 aaPredicted RBP4.92□□□□□ -1.62
VPS35-205ENST00000563984 RAB3GAP2Q9H2M9 1393 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 WDR97A6NE52 1622 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 C2orf92A0A1B0GVN3 265 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SH3PXD2BA1X283 911 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 EFCAB8A8MWE9 144 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 NR5A2O00482 541 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CLDN4O14493 209 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TXNDC9O14530 226 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TM9SF1O15321 606 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 INPPL1O15357 1258 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 COCHO43405 550 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SCO2O43819 266 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 GMDSO60547 372 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ECI2O75521 394 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 WBP4O75554 376 aaKnown RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 CH25HO95992 272 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 MT-ATP6P00846 226 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SERPINA5P05154 406 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 NHLRC4P0CG21 123 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 SAGP10523 405 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 MYF5P13349 255 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 F3P13726 295 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CBR1P16152 277 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ZNF12P17014 697 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CPT2P23786 658 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 PTPN3P26045 913 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 LCN1P31025 176 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TALDO1P37837 337 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CDC34P49427 236 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 ERFP50548 548 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 BCAP31P51572 246 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CCR4P51679 360 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 PGDP52209 483 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TAS2R60P59551 318 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 GHRHRQ02643 423 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 LRRC63Q05C16 580 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SF3A3Q12874 501 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS35-205ENST00000563984 SLAQ13239 276 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 SNTA1Q13424 505 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 EMC2Q15006 297 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 LARS2Q15031 903 aaKnown RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 RPS6KA1Q15418 735 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CYP1B1Q16678 543 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 PNLIPRP3Q17RR3 467 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 EIF2S3LQ2VIR3 472 aaKnown RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 PTCHD3Q3KNS1 767 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ACCSLQ4AC99 568 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 KLHL12Q53G59 568 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ZNF628Q5EBL2 1059 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 C9orf152Q5JTZ5 239 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 EOGTQ5NDL2 527 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.91□□□□□ -1.62
VPS35-205ENST00000563984 RAET1GQ6H3X3 334 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 TANGO2Q6ICL3 276 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 NIPAL1Q6NVV3 410 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 PSRC1Q6PGN9 363 aaPredicted RBP4.91□□□□□ -1.62
VPS35-205ENST00000563984 TSSK4Q6SA08 328 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 CES3Q6UWW8 571 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 ZDHHC24Q6UX98 284 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 GPRIN3Q6ZVF9 776 aa4.91□□□□□ -1.62
VPS35-205ENST00000563984 NIPA1Q7RTP0 329 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms