RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 XKR6Q5GH73 641 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 CCSAPQ6IQ19 270 aaPredicted RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 CRTC1Q6UUV9 634 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 CCBE1Q6UXH8 406 aaPredicted RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 NEK10Q6ZWH5 1172 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 FAM9CQ8IZT9 166 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SYNPOQ8N3V7 929 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 POP5Q969H6 163 aaKnown RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 ALG14Q96F25 216 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 TXNDC15Q96J42 360 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 CASD1Q96PB1 797 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 CTRCQ99895 268 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 DUSP26Q9BV47 211 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 DNAJC11Q9NVH1 559 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 PCDHB7Q9Y5E2 793 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 PCDHGB3Q9Y5G1 929 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 LYVE1Q9Y5Y7 322 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 ISPDA4D126 451 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 TMEM229AB2RXF0 380 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SH3BP5O60239 455 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 NUAK1O60285 661 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 TPPPO94811 219 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 ETHE1O95571 254 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SLC6A12P48065 614 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SRSF11Q05519 484 aaKnown RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 PPIGQ13427 754 aaKnown RBP eCLIP12.74□□□□□ -0.376e-7■■□□□ 11.8
CLN3-210ENST00000563874 GPR33Q49SQ1 333 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 GDPD3Q7L5L3 318 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 L3MBTL4Q8NA19 623 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 OR10G2Q8NGC3 310 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 OR9Q2Q8NGE9 314 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 MYDGFQ969H8 173 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 KCNS3Q9BQ31 491 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SLC12A9Q9BXP2 914 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 ADPRHL2Q9NX46 363 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 NDUFAF4Q9P032 175 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 PCDHB11Q9Y5F2 797 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 SAGE2PA6NJ88 616 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GABRR3A8MPY1 467 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 H7C4K7 107 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 J3KTA2 159 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 TAF4O00268 1085 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GCM2O75603 506 aaPredicted RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 GALTP07902 379 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 UGT2B10P36537 528 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 CRATP43155 626 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ACSM2AQ08AH3 577 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GGTA1PQ4G0N0 100 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ACSM2BQ68CK6 577 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 METTL2BQ6P1Q9 378 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 ZNF852Q6ZMS4 543 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ZNF605Q86T29 641 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 RAVER1Q8IY67 606 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 PGBD3Q8N328 593 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ASB11Q8WXH4 323 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 FCGR1BQ92637 280 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 EPYCQ99645 322 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GABARAPL3Q9BY60 117 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ZDHHC3Q9NYG2 299 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 SH3BP4Q9P0V3 963 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 VPS29Q9UBQ0 182 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 AGRPO00253 132 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ARHGEF15O94989 841 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GBAP04062 536 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 HLA-EP13747 358 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 STK19P49842 368 aaPredicted RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 HNRNPFP52597 415 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 SPIBQ01892 262 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 DGKKQ5KSL6 1271 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 COX20Q5RI15 118 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 LYPLAL1Q5VWZ2 237 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 CYP4Z2PQ8N1L4 340 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 DBF4BQ8NFT6 615 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 EFHD2Q96C19 240 aaPredicted RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 MED8Q96G25 268 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 OR5M11Q96RB7 305 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 HOXD1Q9GZZ0 328 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ERVK13-1Q9NX77 482 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ZNF226Q9NYT6 803 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 E7EQ34 232 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 CTDSP2O14595 271 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 NDUFB5O43674 189 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 MRPS14O60783 128 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 ADRA2AP08913 450 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 ETFAP13804 333 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 PRKAR2AP13861 404 aaKnown RBP12.73□□□□□ -0.37
CLN3-210ENST00000563874 LHCGRP22888 699 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 PRPH2P23942 346 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 BMPR1AP36894 532 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 CASP3P42574 277 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 RGS6P49758 472 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 PFN3P60673 137 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 COPZ1P61923 177 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 IFITM2Q01629 132 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 PRKCZQ05513 592 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 DMC1Q14565 340 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 RGNQ15493 299 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 MED22Q15528 200 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 EXOC3L2Q2M3D2 409 aa12.73□□□□□ -0.37
CLN3-210ENST00000563874 GPR155Q7Z3F1 870 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms