RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GLYATQ6IB77 296 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 LAYNQ6UX15 382 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 CHST15Q7LFX5 561 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 COMMD6Q7Z4G1 85 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TRIM74Q86UV6 250 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 OOSP2Q86WS3 158 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ADHFE1Q8IWW8 467 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TRIM48Q8IWZ4 208 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 LRRC56Q8IYG6 542 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 KIAA2013Q8IYS2 634 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 MICU2Q8IYU8 434 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 CARFQ8N187 725 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 CAMKK1Q8N5S9 505 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 GOT1L1Q8NHS2 421 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 DNAJB14Q8TBM8 379 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 LZICQ8WZA0 190 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 HLA-CQ95604 372 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TBC1D20Q96BZ9 403 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ZBED6CLQ96FA7 236 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 KCNC2Q96PR1 638 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 OR4K3Q96R72 315 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 DUSP26Q9BV47 211 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 NLNQ9BYT8 704 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 FAM192AQ9GZU8 254 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 CHRDQ9H2X0 955 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ACTL8Q9H568 366 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 KAT8Q9H7Z6 458 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 CARS2Q9HA77 564 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 MRPS30Q9NP92 439 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 ACSS1Q9NUB1 689 aaPredicted RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 GIMAP4Q9NUV9 329 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 IMP3Q9NV31 184 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 ADPRHL2Q9NX46 363 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 LYARQ9NX58 379 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 CMTM6Q9NX76 183 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 MS4A12Q9NXJ0 267 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 WNT16Q9UBV4 365 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 PACSIN3Q9UKS6 424 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 HCN2Q9UL51 889 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 SUFUQ9UMX1 484 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 TDRKHQ9Y2W6 561 aaKnown RBP7.23□□□□□ -1.25
VPS39-204ENST00000561818 GPSM3Q9Y4H4 160 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 KLK4Q9Y5K2 254 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 ORC6Q9Y5N6 252 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 SPACA6W5XKT8 324 aa7.23□□□□□ -1.25
VPS39-204ENST00000561818 NUMA1Q14980 2115 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 CEP290O15078 2479 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 COL4A2P08572 1712 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TRBV5-3A0A0A0MS03 114 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 BLACEA4D250 179 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 RFXAPO00287 272 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 SNPHO15079 494 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 AGR2O95994 175 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 SLC35G6P0C7Q6 338 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 F3P13726 295 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ITGA2P17301 1181 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 NDUFV2P19404 249 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 DDCP20711 480 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 IL12AP29459 219 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 CD6P30203 668 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 DPP6P42658 865 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 WASP42768 502 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZFP36L2P47974 494 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 METAP1P53582 386 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 MAPK12P53778 367 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 RPS13P62277 151 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 DLX2Q07687 328 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 DDX39BQ13838 428 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 RBBP5Q15291 538 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 ATP6AP1Q15904 470 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZNF630Q2M218 657 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 PGS1Q32NB8 556 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 PAGE3Q5JUK9 113 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 CPZQ66K79 652 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 SLC2A7Q6PXP3 512 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 SCIMPQ6UWF3 145 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZBTB49Q6ZSB9 765 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 FAM92BQ6ZTR7 304 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ABI3BPQ7Z7G0 1075 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 SLC9B2Q86UD5 537 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 AMIGO1Q86WK6 493 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZC3H7AQ8IWR0 971 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 UBALD2Q8IYN6 164 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZCCHC7Q8N3Z6 543 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 MARVELD2Q8N4S9 558 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 C1orf52Q8N6N3 182 aaKnown RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 LMNTD1Q8N9Z9 388 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 MFSD2AQ8NA29 543 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 PLA2G15Q8NCC3 412 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 C11orf65Q8NCR3 313 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 HIPK4Q8NE63 616 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ZNF548Q8NEK5 533 aaPredicted RBP7.22□□□□□ -1.25
VPS39-204ENST00000561818 TSTD1Q8NFU3 115 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 OR5AR1Q8NGP9 310 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 ADAMTS18Q8TE60 1221 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 RSC1A1Q92681 617 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 FAM162AQ96A26 154 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 NRBF2Q96F24 287 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 APIPQ96GX9 242 aa7.22□□□□□ -1.25
VPS39-204ENST00000561818 TEX37Q96LM6 180 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms