RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 MAN1A2O60476 641 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 PRAMEF2O60811 474 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 DNAJB6O75190 326 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RDH16O75452 317 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 CDC123O75794 336 aaPredicted RBP10.98□□□□□ -0.65
USP3-220ENST00000561381 UNC5CO95185 931 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RASAL1O95294 804 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 CDH1P12830 882 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 ICAM2P13598 275 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 CDKN2DP55273 166 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RPS15AP62244 130 aaKnown RBP10.98□□□□□ -0.65
USP3-220ENST00000561381 NAE1Q13564 534 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 INAQ16352 499 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 PHKG1Q16816 387 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 BTBD16Q32M84 506 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 SP5Q6BEB4 398 aaPredicted RBP10.98□□□□□ -0.65
USP3-220ENST00000561381 AGTRAPQ6RW13 159 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 PAQR3Q6TCH7 311 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 ANKRD37Q7Z713 158 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 SLC26A11Q86WA9 606 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 C2CD4AQ8NCU7 369 aaPredicted RBP10.98□□□□□ -0.65
USP3-220ENST00000561381 MCOLN3Q8TDD5 553 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RELTQ969Z4 430 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 TM4SF19Q96DZ7 209 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 PBKQ96KB5 322 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 FAM167BQ9BTA0 163 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RBCK1Q9BYM8 510 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 RNF32Q9H0A6 362 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 ABI3Q9P2A4 366 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 TRMT6Q9UJA5 497 aaKnown RBP10.98□□□□□ -0.65
USP3-220ENST00000561381 COMMD10Q9Y6G5 202 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 TRGV8A0A0C4DH27 118 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 PRSS44E7EML9 344 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 RNF223E7ERA6 249 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 EIF3FO00303 357 aaPredicted RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 B3GALT4O96024 378 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 NPPBP16860 134 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 HRH2P25021 359 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 GRNP28799 593 aaKnown RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 MEF2AQ02078 507 aaPredicted RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 CRYMQ14894 314 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 MSS51Q4VC12 460 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 RNASEH2BQ5TBB1 312 aaKnown RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 PLAG1Q6DJT9 500 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 ASPGQ86U10 573 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 C17orf64Q86WR6 236 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 LMNTD2Q8IXW0 634 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 PPIL6Q8IXY8 311 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 SLC34A3Q8N130 599 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 BEST3Q8N1M1 668 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 CAMKVQ8NCB2 501 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 OR5T3Q8NGG3 340 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 SLC13A3Q8WWT9 602 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 ITLN2Q8WWU7 325 aaPredicted RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 PYCR2Q96C36 320 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 THAP11Q96EK4 314 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 MOCOSQ96EN8 888 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 LINGO1Q96FE5 620 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 PEX11GQ96HA9 241 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 NPAS2Q99743 824 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 SGPP1Q9BX95 441 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 HES7Q9BYE0 225 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 UNKQ9C0B0 810 aaKnown RBP10.97□□□□□ -0.65
USP3-220ENST00000561381 PARVBQ9HBI1 364 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 ANKHQ9HCJ1 492 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 ANKRD10Q9NXR5 420 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 COPG2Q9UBF2 871 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 SH3BGRL2Q9UJC5 107 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 ENTPD4Q9Y227 616 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 NAALAD2Q9Y3Q0 740 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 JRKLQ9Y4A0 524 aa10.97□□□□□ -0.65
USP3-220ENST00000561381 PCNX1Q96RV3 2341 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 PGRMC1O00264 195 aaKnown RBP10.96□□□□□ -0.65
USP3-220ENST00000561381 HNRNPRO43390 633 aaKnown RBP10.96□□□□□ -0.65
USP3-220ENST00000561381 TSPAN12O95859 305 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 CRYABP02511 175 aaKnown RBP10.96□□□□□ -0.65
USP3-220ENST00000561381 AHSGP02765 367 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 C8GP07360 202 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 PGAM1P18669 254 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 TNFRSF8P28908 595 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 RGS4P49798 205 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 AP2B1P63010 937 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 RHAGQ02094 409 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 DHX9Q08211 1270 aaKnown RBP10.96□□□□□ -0.65
USP3-220ENST00000561381 PTK6Q13882 451 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 ZNF766Q5HY98 468 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 ACER2Q5QJU3 275 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 CAPN13Q6MZZ7 669 aaPredicted RBP10.96□□□□□ -0.65
USP3-220ENST00000561381 UGT3A1Q6NUS8 523 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 H3F3CQ6NXT2 135 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 TMEM207Q6UWW9 146 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 CRLF3Q8IUI8 442 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 IGDCC3Q8IVU1 814 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 MYO1HQ8N1T3 1032 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 MFSD9Q8NBP5 474 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 SUN3Q8TAQ9 357 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 TSLPQ969D9 159 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 CCDC120Q96HB5 630 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 SIGLEC12Q96PQ1 595 aa10.96□□□□□ -0.65
USP3-220ENST00000561381 OR4K3Q96R72 315 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms