RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NDUFS4O43181 175 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 WFS1O76024 890 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 KRT4P19013 534 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 ALAS2P22557 587 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 VARSP26640 1264 aaKnown RBP12.38□□□□□ -0.43
NEDD8-208ENST00000560427 CXADRP78310 365 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 MEF2AQ02078 507 aaPredicted RBP12.38□□□□□ -0.43
NEDD8-208ENST00000560427 SLC18A2Q05940 514 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF844Q08AG5 666 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 DSG2Q14126 1118 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 FBXO48Q5FWF7 155 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 C1orf189Q5VU69 101 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 MRPL14Q6P1L8 145 aaKnown RBP12.38□□□□□ -0.43
NEDD8-208ENST00000560427 GPR155Q7Z3F1 870 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 TRABD2AQ86V40 505 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 SLC22A9Q8IVM8 553 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 CYP4X1Q8N118 509 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 TMEM151AQ8N4L1 468 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 RDH11Q8TC12 318 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 CCDC126Q96EE4 140 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 MAGEB10Q96LZ2 347 aaPredicted RBP12.38□□□□□ -0.43
NEDD8-208ENST00000560427 CATSPER2Q96P56 530 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 SPNS1Q9H2V7 528 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 ACTL8Q9H568 366 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF304Q9HCX3 659 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 NDOR1Q9UHB4 597 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 MID2Q9UJV3 735 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 FARSAQ9Y285 508 aaKnown RBP12.38□□□□□ -0.43
NEDD8-208ENST00000560427 CELSR3Q9NYQ7 3312 aa12.38□□□□□ -0.43
NEDD8-208ENST00000560427 A8MT66 165 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 COPEO14579 308 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 LCMT2O60294 686 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CLEC3AO75596 197 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CREG1O75629 220 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 NSA2O95478 260 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CAPN1P07384 714 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 SERPINA6P08185 405 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 RPS17P08708 135 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 SBK3P0C264 359 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 F8A1P23610 371 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ATP5F1P24539 256 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 EEF1DP29692 281 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 HNF4AP41235 474 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 AVPR1BP47901 424 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 NAA20P61599 178 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 STXBP1P61764 594 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 HERVK_113P63132 956 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CHIT1Q13231 466 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 GTF2H2Q13888 395 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 DOC2AQ14183 400 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 HERC3Q15034 1050 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 RBBP5Q15291 538 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 COL28A1Q2UY09 1125 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 C10orf62Q5T681 223 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ARHGAP40Q5TG30 622 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 LIPJQ5W064 366 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 GRHL2Q6ISB3 625 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 GTF2H2CQ6P1K8 395 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 FAM199XQ6PEV8 388 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 LRIG3Q6UXM1 1119 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ABHD13Q7L211 337 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 OVCH1Q7RTY7 1134 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 GOLGA7Q7Z5G4 137 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 IQCKQ8N0W5 287 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 TEX9Q8N6V9 391 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ENDOVQ8N8Q3 282 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ANKRD53Q8N9V6 530 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ZNF740Q8NDX6 193 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 NACC2Q96BF6 587 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 PHF21BQ96EK2 531 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 RNF31Q96EP0 1072 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ERVK-6Q9BXR3 956 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 SLC6A16Q9GZN6 736 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 RHBGQ9H310 441 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 AKIRIN1Q9H9L7 192 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CLK4Q9HAZ1 481 aaKnown RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 CPNE5Q9HCH3 593 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 RRAGDQ9NQL2 400 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-208ENST00000560427 C14orf105Q9NVL8 296 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 IL17BQ9UHF5 180 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ADGRE2Q9UHX3 823 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 PCTPQ9UKL6 214 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 TCFL5Q9UL49 500 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 STK38LQ9Y2H1 464 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 TSC22D4Q9Y3Q8 395 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 ANKRD12Q6UB98 2062 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 DMXL2Q8TDJ6 3036 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 PTPRQQ9UMZ3 2332 aa12.37□□□□□ -0.43
NEDD8-208ENST00000560427 IGLV3-12A0A075B6K2 115 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 CTIFO43310 598 aaKnown RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 SIX3O95343 332 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 MED26O95402 600 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ITGB2P05107 769 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 WT1P19544 449 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 ITGAXP20702 1163 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 FBLP22087 321 aaKnown RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 PRKAA2P54646 552 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 CDC20Q12834 499 aa12.36□□□□□ -0.43
NEDD8-208ENST00000560427 SRSF6Q13247 344 aaKnown RBP12.36□□□□□ -0.43
NEDD8-208ENST00000560427 UGT8Q16880 541 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms