RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 GDE1Q9NZC3 331 aa3.21□□□□□ -1.9
VPS13C-208ENST00000559119 MRPS18CQ9Y3D5 142 aaKnown RBP3.21□□□□□ -1.9
VPS13C-208ENST00000559119 TDRD6O60522 2096 aaKnown RBP3.2□□□□□ -1.9
VPS13C-208ENST00000559119 A0A087WZ39 114 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 IGHV3-16A0A0C4DH30 117 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 hCG_38984A0A1B0GV85 526 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 MTMR11A4FU01 709 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 A6NCN8 305 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 GLTPD2A6NH11 291 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 ZNF749O43361 778 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 TSPAN9O75954 239 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 BAG3O95817 575 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 C4BPBP20851 252 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 ASCL1P50553 236 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 RASGEF1BQ0VAM2 473 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 BAATQ14032 418 aaPredicted RBP3.2□□□□□ -1.9
VPS13C-208ENST00000559119 UTF1Q5T230 341 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 FAM180BQ6P0A1 224 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 IGFL3Q6UXB1 125 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 VASH2Q86V25 355 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 LINC00346Q8IVM7 164 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 ITLN1Q8WWA0 313 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 PRPF31Q8WWY3 499 aaKnown RBP3.2□□□□□ -1.9
VPS13C-208ENST00000559119 PROX1Q92786 737 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 PI4K2AQ9BTU6 479 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 SDCBP2Q9H190 292 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 ASB8Q9H765 288 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 MOB1AQ9H8S9 216 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 IL36AQ9UHA7 158 aa3.2□□□□□ -1.9
VPS13C-208ENST00000559119 TRGV8A0A0C4DH27 118 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 A0A1W2PPK0 400 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 RNF103O00237 685 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 DOK2O60496 412 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 SAP30O75446 220 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 C9P02748 559 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 EPCAMP16422 314 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 MATKP42679 507 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 ABCE1P61221 599 aaKnown RBP3.19□□□□□ -1.9
VPS13C-208ENST00000559119 DDX10Q13206 875 aaKnown RBP3.19□□□□□ -1.9
VPS13C-208ENST00000559119 TMEM44Q2T9K0 475 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 EMBQ6PCB8 327 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 PP632Q6XCG6 107 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 HSCBQ8IWL3 235 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 KIAA1524Q8TCG1 905 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 ROBO4Q8WZ75 1007 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 SLC22A18Q96BI1 424 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 TMCO6Q96DC7 493 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 DGAT2Q96PD7 388 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 MARCH7Q9H992 704 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 IL1RAPQ9NPH3 570 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 RNF123Q5XPI4 1314 aa3.19□□□□□ -1.9
VPS13C-208ENST00000559119 TRAV24A0A0B4J272 114 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 TRIM77I1YAP6 450 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 RTCAO00442 366 aaKnown RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 ENTPD3O75355 529 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 QDPRP09417 244 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 SUPT20HL2P0C7V6 817 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 CD22P20273 847 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 CHAF1BQ13112 559 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 MLF2Q15773 248 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 HERC4Q5GLZ8 1057 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 LINC00242Q5T6M2 205 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 PRSS55Q6UWB4 352 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 RPAINQ86UA6 219 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 TAGAPQ8N103 731 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 TTC30BQ8N4P2 665 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 C11orf52Q96A22 123 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 JAKMIP2Q96AA8 810 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 MPP4Q96JB8 637 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 ZNF830Q96NB3 372 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 NEDD4LQ96PU5 975 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 SDHCQ99643 169 aaPredicted RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 ANKZF1Q9H8Y5 726 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 CUTCQ9NTM9 273 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 HAUS2Q9NVX0 235 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 HAO2Q9NYQ3 351 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 TXNDC16Q9P2K2 825 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 PILRAQ9UKJ1 303 aa3.18□□□□□ -1.9
VPS13C-208ENST00000559119 PPIEQ9UNP9 301 aaKnown RBP3.18□□□□□ -1.9
VPS13C-208ENST00000559119 HDAC3O15379 428 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CSN3P07498 182 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CSH1P0DML2 217 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CSH2P0DML3 217 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 GIFP27352 417 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 SFTPDP35247 375 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CLDN15P56746 228 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 TTC31Q49AM3 519 aaPredicted RBP3.17□□□□□ -1.9
VPS13C-208ENST00000559119 ZNF506Q5JVG8 444 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 C6orf163Q5TEZ5 329 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 MAATS1Q7Z4T9 603 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CARM1Q86X55 608 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 CASP10Q92851 521 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 FEVQ99581 238 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 IL12RB2Q99665 862 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 LCE3DQ9BYE3 92 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 NOL11Q9H8H0 719 aaKnown RBP3.17□□□□□ -1.9
VPS13C-208ENST00000559119 RNF121Q9H920 327 aa3.17□□□□□ -1.9
VPS13C-208ENST00000559119 RAVER2Q9HCJ3 691 aaKnown RBP3.17□□□□□ -1.9
VPS13C-208ENST00000559119 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.17□□□□□ -1.9
VPS13C-208ENST00000559119 ADAM22Q9P0K1 906 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms