RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CCDC22O60826 627 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 AP2A2O94973 939 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 SNUPNO95149 360 aaKnown RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 WISP3O95389 354 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 SBK3P0C264 359 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 EBLN1P0CF75 366 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 T-ENOLP0DO92 83 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 COX6B1P14854 86 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 SAT1P21673 171 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 HTR1EP28566 365 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 SERPINB3P29508 390 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 NSG1P42857 185 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 AQP5P55064 265 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 PRKG2Q13237 762 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 TYSND1Q2T9J0 566 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 PLEKHS1Q5SXH7 462 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 RBM20Q5T481 1227 aaKnown RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 PRAMEF17Q5VTA0 474 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 LYPLAL1Q5VWZ2 237 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 LIPMQ5VYY2 423 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 FAM45BPQ6NSW5 357 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 ARMC6Q6NXE6 501 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 KLHL35Q6PF15 583 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 TBC1D1Q86TI0 1168 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 LDB1Q86U70 411 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 CDH24Q86UP0 819 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 FAM45AQ8TCE6 357 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 GRHL3Q8TE85 626 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 STON2Q8WXE9 905 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 ELMO1Q92556 727 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 RELTQ969Z4 430 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 SCYL1Q96KG9 808 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 TTC1Q99614 292 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 NRTNQ99748 197 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 MRPL57Q9BQC6 102 aaKnown RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 MRPL46Q9H2W6 279 aaKnown RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 POPDC3Q9HBV1 291 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 FGF21Q9NSA1 209 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 INTS10Q9NVR2 710 aaKnown RBP11.99□□□□□ -0.49
SHMT2-230ENST00000557427 VWA7Q9Y334 891 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 FER1L5A0AVI2 2057 aa11.99□□□□□ -0.49
SHMT2-230ENST00000557427 UBA6A0AVT1 1052 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 FCHO1O14526 889 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 CD3EAPO15446 510 aaKnown RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 LYPLA1O75608 230 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 NADKO95544 446 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 HSPA4LO95757 839 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 LTA4HP09960 611 aaKnown RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 RAB40ALP0C0E4 278 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 EDN3P14138 238 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 POLR2CP19387 275 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 ARL4DP49703 201 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 DLG1Q12959 904 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 SEMA3AQ14563 771 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 TBCCQ15814 346 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 FAM83EQ2M2I3 478 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 ZNF789Q5FWF6 425 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 HECTD2Q5U5R9 776 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 FBXW10Q5XX13 1052 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 CYB5D1Q6P9G0 228 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 AFTPHQ6ULP2 937 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 BNC2Q6ZN30 1099 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 SDCCAG8Q86SQ7 713 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 SIDT2Q8NBJ9 832 aaKnown RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 FAR1Q8WVX9 515 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 ZFPM2Q8WW38 1151 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 LCN9Q8WX39 176 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 NXNL1Q96CM4 212 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 NSL1Q96IY1 281 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 RAB3IPQ96QF0 476 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 TCF12Q99081 682 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 MAP3K3Q99759 626 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 OLFM1Q99784 485 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 GATA5Q9BWX5 397 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 NLNQ9BYT8 704 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 DRC3Q9H069 523 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 OR52A5Q9H2C5 316 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 CATSPERZQ9NTU4 200 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 MARCH4Q9P2E8 410 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-230ENST00000557427 EPHA6Q9UF33 1036 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 HAO1Q9UJM8 370 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 HEBP2Q9Y5Z4 205 aa11.98□□□□□ -0.49
SHMT2-230ENST00000557427 OR5K3A6NET4 321 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 MGRN1O60291 552 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 CPNE3O75131 537 aaKnown RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 SCRG1O75711 98 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 RBP1P09455 135 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 OR56A5P0C7T3 313 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 KITP10721 976 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 FDXRP22570 491 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 ARRB2P32121 409 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 SERPINB5P36952 375 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 RRADP55042 308 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 DNAJB13P59910 316 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 KCNJ2P63252 427 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 ELF3P78545 371 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-230ENST00000557427 RIPK1Q13546 671 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 MYBPC3Q14896 1274 aa11.97□□□□□ -0.49
SHMT2-230ENST00000557427 TECRLQ5HYJ1 363 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms