RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 RAB3IPQ96QF0 476 aaPredicted RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 TRAF4Q9BUZ4 470 aaPredicted RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 TRMT61BQ9BVS5 477 aaKnown RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 PUS3Q9BZE2 481 aaKnown RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 EDEM3Q9BZQ6 932 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 VN1R1Q9GZP7 353 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 ZBTB20Q9HC78 741 aaPredicted RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 FAM118AQ9NWS6 357 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 B3GAT1Q9P2W7 334 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 CPSF3Q9UKF6 684 aaKnown RBP1.41□□□□□ -2.18
PRPF39-208ENST00000554785 AGTPBP1Q9UPW5 1226 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 JRKLQ9Y4A0 524 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 MTCH2Q9Y6C9 303 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 SIPA1L1O43166 1804 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 TANC1Q9C0D5 1861 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 AHNAK2Q8IVF2 5795 aa1.41□□□□□ -2.18
PRPF39-208ENST00000554785 ZNF236Q9UL36 1845 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 NEMP2A6NFY4 417 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 OR6C76A6NM76 312 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 E9PI62 339 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PI4K2BG5E9Z4 385 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 GAPDHSO14556 408 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 LINC01565O15544 149 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 HTATSF1O43719 755 aaKnown RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 XPNPEP2O43895 674 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PRKNO60260 465 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 KRT36O76013 467 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 WDPCPO95876 746 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PENKP01210 267 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 IGHV2-70P01814 119 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CRYAAP02489 173 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PCCAP05165 728 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 IGKV5-2P06315 115 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ATP5BP06576 529 aaKnown RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FGF5P12034 268 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SCG2P13521 617 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 NR1D1P20393 614 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MPZP25189 248 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 HSPA4P34932 840 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 NR2C2P49116 596 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ASCL1P50553 236 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MAPK12P53778 367 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 HILS1P60008 231 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CX3CL1P78423 397 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 BEX3Q00994 111 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ARL16Q0P5N6 197 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 TFCP2Q12800 502 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 DMP1Q13316 513 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PPIGQ13427 754 aaKnown RBP eCLIP1.4□□□□□ -2.187e-9■■■□□ 18.1
PRPF39-208ENST00000554785 CCNYL2Q5T2Q4 361 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MFSD14CQ5VZR4 134 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PRR27Q6MZM9 219 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 APOBEC3HQ6NTF7 200 aaKnown RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MFSD12Q6NUT3 480 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CDC42EP5Q6NZY7 148 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CORO6Q6QEF8 472 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FAM47EQ6ZV65 393 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ANO5Q75V66 913 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ADCK2Q7Z695 626 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SMIM29Q86T20 159 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PLD3Q8IV08 490 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 THNSL1Q8IYQ7 743 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ARHGAP24Q8N264 748 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 DCLK2Q8N568 766 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 TRIML1Q8N9V2 468 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SLC24A4Q8NFF2 622 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 OR13J1Q8NGT2 312 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FGFBP3Q8TAT2 258 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ZNF473Q8WTR7 871 aaKnown RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CCDC107Q8WV48 283 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SSMEM1Q8WWF3 244 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SYN2Q92777 582 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 STAMBPL1Q96FJ0 436 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ST6GAL2Q96JF0 529 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CFAP53Q96M91 514 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 LRRC3BQ96PB8 259 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 INPP4AQ96PE3 977 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 GBP5Q96PP8 586 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 NODALQ96S42 347 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MYADMQ96S97 322 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FEVQ99581 238 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 CPNE1Q99829 537 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 EGFL8Q99944 293 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 RTP3Q9BQQ7 232 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FSD1Q9BTV5 496 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 FAM129AQ9BZQ8 928 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ARRDC1-AS1Q9H2J1 176 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 TFB2MQ9H5Q4 396 aaKnown RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 UBE2ZQ9H832 354 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 PELI2Q9HAT8 420 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 MYNNQ9NPC7 610 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SERINC1Q9NRX5 453 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 TAAR2Q9P1P5 351 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 LRWD1Q9UFC0 647 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ERRFI1Q9UJM3 462 aaPredicted RBP1.4□□□□□ -2.18
PRPF39-208ENST00000554785 RNF150Q9ULK6 438 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 SLC7A7Q9UM01 511 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 NUDCQ9Y266 331 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 RALGAPA2Q2PPJ7 1873 aa1.4□□□□□ -2.18
PRPF39-208ENST00000554785 ATMQ13315 3056 aa1.4□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms