RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CSGALNACT1Q8TDX6 532 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TBC1D20Q96BZ9 403 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SIGLEC11Q96RL6 698 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 DUSP26Q9BV47 211 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ASPSCR1Q9BZE9 553 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 WDR12Q9GZL7 423 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CHST8Q9H2A9 424 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 RUBCNLQ9H714 662 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 NECTIN3Q9NQS3 549 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 RAD18Q9NS91 495 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 GPATCH2Q9NW75 528 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 RPS6KA6Q9UK32 745 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CCL26Q9Y258 94 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SH3BP1Q9Y3L3 701 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 PCDHB11Q9Y5F2 797 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 A0A1W2PRU2 124 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 C1orf226A1L170 272 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 PRAMEF25A6NGN4 478 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FADS2P1A8MWK0 482 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 EFCAB9A8MZ26 197 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 M0R082 166 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SAP18O00422 153 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SCAMP2O15127 329 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 DNAJB5O75953 348 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 LATS1O95835 1130 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 C9P02748 559 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 POU2F1P14859 743 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CYP2A7P20853 494 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 MAGP20916 626 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ETV3P41162 512 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 HNMTP50135 292 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ATN1P54259 1190 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 EPHB3P54753 998 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 CXCR4P61073 352 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SRSF11Q05519 484 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ACSM2AQ08AH3 577 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 IER5LQ5T953 404 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ACSM2BQ68CK6 577 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TPGS2Q68CL5 300 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 OTOP2Q7RTS6 562 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SLC22A16Q86VW1 577 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 PGBD3Q8N328 593 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TCAIMQ8N3R3 496 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 OR8J2Q8NGG1 315 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 PSMA8Q8TAA3 256 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FIBINQ8TAL6 211 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SPPL2AQ8TCT8 520 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 C11orf24Q96F05 449 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FCRL1Q96LA6 429 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 MCCC1Q96RQ3 725 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FEVQ99581 238 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TSEN34Q9BSV6 310 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 MIR1-1HGQ9H1L0 117 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SGK2Q9HBY8 427 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 FBXO8Q9NRD0 319 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 MRPL17Q9NRX2 175 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TAS2R16Q9NYV7 291 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SH3BP4Q9P0V3 963 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 LSM7Q9UK45 103 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ACSL6Q9UKU0 697 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 EXO1Q9UQ84 846 aaKnown RBP7.23□□□□□ -1.25
LIMA1-213ENST00000552720 ERVW-1Q9UQF0 538 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 SH2B3Q9UQQ2 575 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 TRIM17Q9Y577 477 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 NOTCH4Q99466 2003 aa7.23□□□□□ -1.25
LIMA1-213ENST00000552720 DOCK9Q9BZ29 2069 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 KIF26AQ9ULI4 1882 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 J3KTA2 159 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TSPAN6O43657 245 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SLC16A8O95907 504 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ANXA4P09525 319 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MPC1LP0DKB6 136 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 HLA-EP13747 358 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ETFAP13804 333 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 IDSP22304 550 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 GADD45AP24522 165 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PBLDP30039 288 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MAPK8P45983 427 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 IDH2P48735 452 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CTSCP53634 463 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RPS3AP61247 264 aaKnown RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CYP4F2P78329 520 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MC1RQ01726 317 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TSTA3Q13630 321 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-213ENST00000552720 RGNQ15493 299 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PROX2Q3B8N5 592 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 MPPE1Q53F39 396 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 CDKL4Q5MAI5 379 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 AGTRAPQ6RW13 159 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PRSS48Q7RTY5 328 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM25Q86YD3 366 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 NLGN4XQ8N0W4 816 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ELMOD1Q8N336 334 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SLC5A8Q8N695 610 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 SORCS1Q8WY21 1168 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 HPS1Q92902 700 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 ZHX1-C8orf76Q96EF9 292 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM169Q96HH4 297 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 PITX2Q99697 317 aa7.22□□□□□ -1.25
LIMA1-213ENST00000552720 NIPSNAP1Q9BPW8 284 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms