RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ADPRHL2Q9NX46 363 aa4.44□□□□□ -1.7
LIMA1-205ENST00000550592 ARMCX3Q9UH62 379 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-205ENST00000550592 ITGA11Q9UKX5 1188 aa4.44□□□□□ -1.7
LIMA1-205ENST00000550592 STUB1Q9UNE7 303 aa4.44□□□□□ -1.7
LIMA1-205ENST00000550592 RIPK3Q9Y572 518 aa4.44□□□□□ -1.7
LIMA1-205ENST00000550592 VPS8Q8N3P4 1428 aa4.44□□□□□ -1.7
LIMA1-205ENST00000550592 PPLO60437 1756 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 A0A0U1RQK1 487 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 ZNF320A2RRD8 509 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 A4D1N5 150 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 O00370 1275 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 SELENOFO60613 162 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 CAVIN2O95810 425 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 CD27P26842 260 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 CSTF2P33240 577 aaKnown RBP eCLIP4.43□□□□□ -1.7
LIMA1-205ENST00000550592 EPHX2P34913 555 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 SOAT1P35610 550 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 RASGEF1BQ0VAM2 473 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 NFE2L1Q14494 772 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 PDLIM3Q53GG5 364 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-205ENST00000550592 XKR3Q5GH77 459 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 SLC35D3Q5M8T2 416 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 C20orf194Q5TEA3 1177 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 SLC35E4Q6ICL7 350 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 RBMS3Q6XE24 437 aaKnown RBP4.43□□□□□ -1.7
LIMA1-205ENST00000550592 GBP6Q6ZN66 633 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 ANKRD33Q7Z3H0 272 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 PHLDB2Q86SQ0 1253 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 TRPT1Q86TN4 253 aaKnown RBP4.43□□□□□ -1.7
LIMA1-205ENST00000550592 ISCA2Q86U28 154 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 IQCA1Q86XH1 822 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 LMNTD1Q8N9Z9 388 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 OR10Q1Q8NGQ4 319 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 SEPT1Q8WYJ6 367 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 RIT1Q92963 219 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 P2RX5Q93086 422 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 MTMR12Q9C0I1 747 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 ACTL8Q9H568 366 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 VPS18Q9P253 973 aa4.43□□□□□ -1.7
LIMA1-205ENST00000550592 KIAA0100Q14667 2235 aaKnown RBP4.43□□□□□ -1.7
LIMA1-205ENST00000550592 NSD2O96028 1365 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 PALLDQ8WX93 1383 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 C5P01031 1676 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 QRICH2Q9H0J4 1663 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 SCN4AP35499 1836 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 DOCK7Q96N67 2140 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 IGHV4-61A0A0C4DH41 118 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 YDJCA8MPS7 323 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 FLRT2O43155 660 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 PPIP5K2O43314 1243 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 LMX1BO60663 402 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 IGLV2-11P01706 119 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 IGHV4-59P01825 116 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 C9P02748 559 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 RLN1P04808 185 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 LBPP18428 481 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 EPORP19235 508 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 CEACAM8P31997 349 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 TIMP3P35625 211 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 NKX2-1P43699 371 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 SLMAPQ14BN4 828 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 HERC3Q15034 1050 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 NONOQ15233 471 aaKnown RBP eCLIP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 CST9Q5W186 159 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 CYB5D1Q6P9G0 228 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 C18orf65Q6ZTR6 163 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 SLC26A9Q7LBE3 791 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 HOOK3Q86VS8 718 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 AMIGO1Q86WK6 493 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 APCDD1Q8J025 514 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 TMCO5AQ8N6Q1 288 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 STPG4Q8N801 248 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 TMEM143Q96AN5 459 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 PGM2Q96G03 612 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 BSCL2Q96G97 398 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 SENP5Q96HI0 755 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 MAP3K3Q99759 626 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 CCDC3Q9BQI4 270 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 FUT8Q9BYC5 575 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 DNAI2Q9GZS0 605 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 RSPH9Q9H1X1 276 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 TMEM206Q9H813 350 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 FAM207AQ9NSI2 230 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 ZNF580Q9UK33 172 aa4.42□□□□□ -1.7
LIMA1-205ENST00000550592 GREB1LQ9C091 1923 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-205ENST00000550592 CPSF1Q10570 1443 aaKnown RBP4.41□□□□□ -1.7
LIMA1-205ENST00000550592 SMIM1B2RUZ4 78 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 CIDEAO60543 219 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 DFFBO76075 338 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 APOHP02749 345 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-205ENST00000550592 SERPING1P05155 500 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 PRSS1P07477 247 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 ITGA3P26006 1051 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 RFC4P35249 363 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 KCNJ1P48048 391 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 CACNG1Q06432 222 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 GPR17Q13304 367 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 P2RY6Q15077 328 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 LYSMD4Q5XG99 296 aa4.41□□□□□ -1.7
LIMA1-205ENST00000550592 FAM166AQ6J272 317 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms