RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CXorf57Q6NSI4 855 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 ADGRG6Q86SQ4 1221 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CADM2Q8N3J6 435 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 STON2Q8WXE9 905 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 FBXL8Q96CD0 374 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 PCDHGB3Q9Y5G1 929 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 LOC100130705A0A1B0GUX0 176 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 EEDO75530 441 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 KAT7O95251 611 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 HMGA1P17096 107 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 CEBPBP17676 345 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 HOXC13P31276 330 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 RNF144AP50876 292 aaPredicted RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 ALDH3A2P51648 485 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CDKL1Q00532 357 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 GNA13Q14344 377 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CATSPEREQ5SY80 951 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CES4AQ5XG92 561 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 NEK5Q6P3R8 708 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 SH2D5Q6ZV89 423 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 NANOGNBQ7Z5D8 188 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 TRIM73Q86UV7 250 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 SRFBP1Q8NEF9 429 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 CNPPD1Q9BV87 410 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 NDEL1Q9GZM8 345 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 GSRP00390 522 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 NR2F6P10588 404 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 ZNF763Q0D2J5 394 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 GALNT1Q10472 559 aaPredicted RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 ZNF542PQ5EBM4 170 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 ZNF57Q68EA5 555 aaPredicted RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 TRAM1L1Q8N609 369 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 C19orf18Q8NEA5 215 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 HTRA1Q92743 480 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 P2RY13Q9BPV8 354 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 GPRC5BQ9NZH0 403 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 PTGFRNQ9P2B2 879 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 MMP2P08253 660 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 PTX3P26022 381 aaPredicted RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 PTGER1P34995 402 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 HYAL2Q12891 473 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 LRP8Q14114 963 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 GHDCQ8N2G8 530 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 TEX26Q8N6G2 289 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 CNIH3Q8TBE1 160 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 UBASH3BQ8TF42 649 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 Q96MT0 163 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 POLR2J3Q9H1A7 115 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 BRWD1Q9NSI6 2320 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 IL3P08700 152 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 TYRP1P17643 537 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 PDHA2P29803 388 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 MRPL28Q13084 256 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 CYBRD1Q53TN4 286 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 FAM91A1Q658Y4 838 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 DUS1LQ6P1R4 473 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 DCUN1D3Q8IWE4 304 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 PLAC1Q9HBJ0 212 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 GALNT8Q9NY28 637 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 UTS2RQ9UKP6 389 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 TMED5Q9Y3A6 229 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 CPSF4LA6NMK7 179 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 ARHGEF9O43307 516 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 DNAJA1P31689 397 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.49□□□□□ -0.09
CUX1-214ENST00000550008 DMPKQ09013 629 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 FAM46DQ8NEK8 389 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 TTLL2Q9BWV7 592 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 ABCB9Q9NP78 766 aa14.49□□□□□ -0.09
CUX1-214ENST00000550008 FAM120CQ9NX05 1096 aaKnown RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 TRIP12Q14669 1992 aaPredicted RBP14.49□□□□□ -0.09
CUX1-214ENST00000550008 MID1O15344 667 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 MFN2O95140 757 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TALDO1P37837 337 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PNLIPRP1P54315 467 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 BTN3A2P78410 334 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 DDI2Q5TDH0 399 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 MACC1Q6ZN28 852 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 IQCHQ86VS3 1027 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 HM13Q8TCT9 377 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TNFRSF12AQ9NP84 129 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PCDHB14Q9Y5E9 798 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TFECO14948 347 aaPredicted RBP14.48□□□□□ -0.09
CUX1-214ENST00000550008 AIREO43918 545 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 ITPKBP27987 946 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 PRR5P85299 388 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 GRSF1Q12849 480 aaKnown RBP eCLIP14.48□□□□□ -0.09
CUX1-214ENST00000550008 TYSND1Q2T9J0 566 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TLDC1Q6P9B6 456 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 RGMAQ96B86 450 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 RC3H2Q9HBD1 1191 aaKnown RBP14.48□□□□□ -0.09
CUX1-214ENST00000550008 IGLV3-25P01717 112 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 CCDC159P0C7I6 412 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 C1GALT1C1LP0DN25 315 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 JUPP14923 745 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 HTR1EP28566 365 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 KDELR2P33947 212 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 SKP1P63208 163 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 GPR68Q15743 365 aa14.48□□□□□ -0.09
CUX1-214ENST00000550008 TCEAL5Q5H9L2 206 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms