RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TGIF2LYQ8IUE0 185 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 DMRTC2Q8IXT2 367 aaPredicted RBP15.91■□□□□ 0.14
VPS29-204ENST00000548259 CPSF7Q8N684 471 aaKnown RBP15.91■□□□□ 0.14
VPS29-204ENST00000548259 NINJ1Q92982 152 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 OR1F2PQ96R84 312 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 TCF12Q99081 682 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 PKP4Q99569 1192 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 FOXC2Q99958 501 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 FRMD8P1Q9BZ68 369 aaPredicted RBP15.91■□□□□ 0.14
VPS29-204ENST00000548259 TMEM184CQ9NVA4 438 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 VPS9D1Q9Y2B5 631 aa15.91■□□□□ 0.14
VPS29-204ENST00000548259 ANKHD1Q8IWZ3 2542 aaKnown RBP15.91■□□□□ 0.14
VPS29-204ENST00000548259 KCNE1BA0A087WTH5 132 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 FAM90A27PA6NNH2 459 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 MAGEB17A8MXT2 336 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 H7BY64 318 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 SLC16A8O95907 504 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 IL1RNP18510 177 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 JAK1P23458 1154 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 MSX1P28360 303 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 GRIA1P42261 906 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 SLC26A5P58743 744 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 MPP1Q00013 466 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 MEF2AQ02078 507 aaPredicted RBP15.9■□□□□ 0.14
VPS29-204ENST00000548259 GBX1Q14549 363 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 USP10Q14694 798 aaKnown RBP15.9■□□□□ 0.14
VPS29-204ENST00000548259 ARHGAP11AQ6P4F7 1023 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 PAOXQ6QHF9 649 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 PLD3Q8IV08 490 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 PLPP5Q8NEB5 264 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 PRAP1Q96NZ9 151 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 NPAS2Q99743 824 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 IL22Q9GZX6 179 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 BFARQ9NZS9 450 aa15.9■□□□□ 0.14
VPS29-204ENST00000548259 DRG1Q9Y295 367 aaKnown RBP15.9■□□□□ 0.14
VPS29-204ENST00000548259 A0A1B0GTH9 108 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 E7ENX8 843 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 SGK494L7N484 410 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 CDC40O60508 579 aaKnown RBP eCLIP15.89■□□□□ 0.13
VPS29-204ENST00000548259 NIPSNAP2O75323 286 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 HOXD4P09016 255 aaPredicted RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 PTGER1P34995 402 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 GRK3P35626 688 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 ST13P50502 369 aaKnown RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 HLCSP50747 726 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 IST1P53990 364 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 ADARP55265 1226 aaKnown RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 SESN2P58004 480 aaPredicted RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 TAP2Q03519 686 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 KLF1Q13351 362 aaPredicted RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 CTSL3PQ5NE16 218 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 TMEM214Q6NUQ4 689 aaKnown RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 NIPAL1Q6NVV3 410 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 CHERPQ8IWX8 916 aaKnown RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 SYCE1Q8N0S2 351 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 AMER2Q8N7J2 671 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 CCDC89Q8N998 374 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 FBXO15Q8NCQ5 510 aaPredicted RBP15.89■□□□□ 0.13
VPS29-204ENST00000548259 ZNF480Q8WV37 535 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 PCBD2Q9H0N5 130 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 SYNPO2LQ9H987 977 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 PAK5Q9P286 719 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 ZNF148Q9UQR1 794 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 RNF6Q9Y252 685 aa15.89■□□□□ 0.13
VPS29-204ENST00000548259 NKX2-6A6NCS4 301 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 BTNL10A8MVZ5 291 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 ZNHIT1O43257 154 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 ZBTB14O43829 449 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 MAN1A2O60476 641 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 SLC35G6P0C7Q6 338 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 HOXB4P17483 251 aaPredicted RBP15.88■□□□□ 0.13
VPS29-204ENST00000548259 KLK2P20151 261 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 TPP2P29144 1249 aaPredicted RBP15.88■□□□□ 0.13
VPS29-204ENST00000548259 MEOX1P50221 254 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 ACSBG2Q5FVE4 666 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 RNFT1Q5M7Z0 435 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 PRSS41Q7RTY9 318 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 FGD2Q7Z6J4 655 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 PPFIBP2Q8ND30 876 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 ELP5Q8TE02 316 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 LPGAT1Q92604 370 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 FAM136AQ96C01 138 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 BIRC8Q96P09 236 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 CXXC4Q9H2H0 198 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 TRIM45Q9H8W5 580 aaPredicted RBP15.88■□□□□ 0.13
VPS29-204ENST00000548259 CCDC177Q9NQR7 707 aaPredicted RBP15.88■□□□□ 0.13
VPS29-204ENST00000548259 NPDC1Q9NQX5 325 aaPredicted RBP15.88■□□□□ 0.13
VPS29-204ENST00000548259 TREX1Q9NSU2 369 aa15.88■□□□□ 0.13
VPS29-204ENST00000548259 OR2W5A6NFC9 320 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 RDH16O75452 317 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 CDC123O75794 336 aaPredicted RBP15.87■□□□□ 0.13
VPS29-204ENST00000548259 TOXO94900 526 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 VAPBO95292 243 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 STATHP02808 62 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 TFEBP19484 476 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 TRHRP34981 398 aaPredicted RBP15.87■□□□□ 0.13
VPS29-204ENST00000548259 NPY2RP49146 381 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 ITGA8P53708 1063 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 RHAGQ02094 409 aa15.87■□□□□ 0.13
VPS29-204ENST00000548259 TBX2Q13207 712 aaPredicted RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms