RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 POP4O95707 220 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 ATF6P18850 670 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 BRCC3P46736 316 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 OR1G1P47890 313 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 MAPKAPK2P49137 400 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 MAPK12P53778 367 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 MAPK10P53779 464 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 EPHA4P54764 986 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 RGS1Q08116 209 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 MTM1Q13496 603 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 NFYCQ13952 458 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ZNF699Q32M78 642 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 GLYATQ6IB77 296 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 OVOS1Q6IE37 1185 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 WDR73Q6P4I2 378 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 METAP1DQ6UB28 335 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 MAMDC2Q7Z304 686 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 SNX29P2Q8IUI4 249 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 FAM217AQ8IXS0 508 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 GHDCQ8N2G8 530 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ZBTB44Q8NCP5 570 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 C2CD4AQ8NCU7 369 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 TTLQ8NG68 377 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 OR7D4Q8NG98 312 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 FAM110BQ8TC76 370 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 DEDD2Q8WXF8 326 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 PSMG2Q969U7 264 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 AHCYL2Q96HN2 611 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 ZFYVE19Q96K21 471 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 AGAP2Q99490 1192 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 GAS2L1Q99501 681 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 ELOVL4Q9GZR5 314 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 SPNS1Q9H2V7 528 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 IL21Q9HBE4 155 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 PLSCR4Q9NRQ2 329 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 OLA1Q9NTK5 396 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 MARK1Q9P0L2 795 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 HCFC2Q9Y5Z7 792 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 DOCK4Q8N1I0 1966 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 A0A0G2JPF8 293 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 HNRNPCL3B7ZW38 293 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 NR5A2O00482 541 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 B3GAT3O94766 335 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 LRIG2O94898 1065 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 PAPSS2O95340 614 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 MT-ND2P03891 347 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ASGR2P07307 311 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 LTA4HP09960 611 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 HNRNPCL4P0DMR1 293 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 PSKH1P11801 424 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 HOXB3P14651 431 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 ZFP36L2P47974 494 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 MAP3K7CLP57077 242 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 IRF3Q14653 427 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 MAD2L1BPQ15013 274 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 IMPG1Q17R60 797 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 AARDQ4LEZ3 155 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 BCL7AQ4VC05 210 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 FAM171A1Q5VUB5 890 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 RNLSQ5VYX0 342 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 KIAA0930Q6ICG6 404 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 NAPEPLDQ6IQ20 393 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 BRICD5Q6PL45 260 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 CLEC2AQ6UVW9 174 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 DET1Q7L5Y6 550 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 BMP8AQ7Z5Y6 402 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 NLGN4XQ8N0W4 816 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 TMEM130Q8N3G9 435 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 CDYL2Q8N8U2 506 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 B3GALNT2Q8NCR0 500 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 OR5T2Q8NGG2 359 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 AGR3Q8TD06 166 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 KCTD4Q8WVF5 259 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 UFD1Q92890 307 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ELMO3Q96BJ8 720 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 DCLRE1CQ96SD1 692 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 CRISPLD1Q9H336 500 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 UBE2ZQ9H832 354 aaPredicted RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 WDR6Q9NNW5 1121 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 ITM2CQ9NQX7 267 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 TMLHEQ9NVH6 421 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 ERVK-18Q9QC07 812 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 NUDT5Q9UKK9 219 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 INSL5Q9Y5Q6 135 aa5.09□□□□□ -1.59
USP28-213ENST00000544967 TCF20Q9UGU0 1960 aaKnown RBP5.09□□□□□ -1.59
USP28-213ENST00000544967 FANCMQ8IYD8 2048 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 CCDC182A6NF36 153 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 B4E171 279 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PLD2O14939 933 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SMAD7O15105 426 aaKnown RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 YKT6O15498 198 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 MBTPS2O43462 519 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 PI15O43692 258 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 ATG13O75143 517 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 SLC43A1O75387 559 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 OR2B3O76000 313 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 RECQL5O94762 991 aaPredicted RBP5.09□□□□□ -1.6
USP28-213ENST00000544967 IGLV3-25P01717 112 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 AHSGP02765 367 aa5.09□□□□□ -1.6
USP28-213ENST00000544967 GAAP10253 952 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms