RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	TP53BP1	Q12888	1972 aa	Predicted RBP	9.71	□□□□□ -0.86
CPSF7-221	ENST00000543545	UNC13C	Q8NB66	2214 aa		9.71	□□□□□ -0.86
CPSF7-221	ENST00000543545	PMS2P1	A4D2B8	440 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545		H0YIV9	168 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	MANBA	O00462	879 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	AZIN1	O14977	448 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SH3BGRL	O75368	114 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ULK1	O75385	1050 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CHEK2	O96017	543 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CTSB	P07858	339 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC35G6	P0C7Q6	338 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SPINK2	P20155	84 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ALAS2	P22557	587 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	GSTM2	P28161	218 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SERPINB3	P29508	390 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SERPINB1	P30740	379 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ETV5	P41161	510 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	GABRA4	P48169	554 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	RAB15	P59190	212 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	GRM7	Q14831	915 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	GGTA1P	Q4G0N0	100 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	FRG2	Q64ET8	278 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CLEC6A	Q6EIG7	209 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	TLDC1	Q6P9B6	456 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SCIMP	Q6UWF3	145 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CEACAM20	Q6UY09	585 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	VN1R4	Q7Z5H5	301 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	LAS2	Q8IYD9	372 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CLYBL	Q8N0X4	340 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	AFAP1L2	Q8N4X5	818 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ANKRD53	Q8N9V6	530 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	OR6Y1	Q8NGX8	325 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	HUS1B	Q8NHY5	278 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	CKAP2	Q8WWK9	683 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF501	Q96CX3	271 aa	Predicted RBP	9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	FRG2B	Q96QU4	278 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	MTERF1	Q99551	399 aa	Known RBP	9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	NDC1	Q9BTX1	674 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	SLC29A3	Q9BZD2	475 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ASPSCR1	Q9BZE9	553 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	POLR1B	Q9H9Y6	1135 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	NDOR1	Q9UHB4	597 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ADGRE2	Q9UHX3	823 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF225	Q9UK10	706 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	KLK13	Q9UKR3	277 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	AP1M2	Q9Y6Q5	423 aa		9.7	□□□□□ -0.86
CPSF7-221	ENST00000543545	HYKK	A2RU49	373 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	URAD	A6NGE7	173 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	POLR3G	O15318	223 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZSCAN9	O15535	394 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZNF749	O43361	778 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CLEC3A	O75596	197 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	SCRG1	O75711	98 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	SNUPN	O95149	360 aa	Known RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TGFB1	P01137	390 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	NTRK1	P04629	796 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	MSL3P1	P0C860	447 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	KIT	P10721	976 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	UROS	P10746	265 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	FGF5	P12034	268 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	PIK3CB	P42338	1070 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	KNTC1	P50748	2209 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	FOXA1	P55317	472 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	STXBP1	P61764	594 aa	Known RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	RPS13	P62277	151 aa	Known RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	GUCY1A3	Q02108	690 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TGM3	Q08188	693 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	GALNT1	Q10472	559 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	PWP1	Q13610	501 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	NDUFA9	Q16795	377 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	HKDC1	Q2TB90	917 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	FAM214A	Q32MH5	1076 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TOR1AIP1	Q5JTV8	583 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TCHHL1	Q5QJ38	904 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	PRAMEF17	Q5VTA0	474 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CES4A	Q5XG92	561 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ADNP2	Q6IQ32	1131 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	PWWP2B	Q6NUJ5	590 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CHSY3	Q70JA7	882 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CRLF3	Q8IUI8	442 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	DDIAS	Q8IXT1	998 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	BMPER	Q8N8U9	685 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZCCHC10	Q8TBK6	192 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CLIP3	Q96DZ5	547 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CMTM7	Q96FZ5	175 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	SEC16B	Q96JE7	1060 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	MAGEB18	Q96M61	343 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	CENPK	Q9BS16	269 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZPBP	Q9BS86	351 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	SARG	Q9BW04	601 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	SCNM1	Q9BWG6	230 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	RHBG	Q9H310	441 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ACTR5	Q9H9F9	607 aa	Predicted RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TNFRSF12A	Q9NP84	129 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	FARSB	Q9NSD9	589 aa	Known RBP	9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	TXLNG	Q9NUQ3	528 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	WDR70	Q9NW82	654 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	ZDHHC2	Q9UIJ5	367 aa		9.69	□□□□□ -0.86
CPSF7-221	ENST00000543545	RUVBL1	Q9Y265	456 aa	Known RBP	9.69	□□□□□ -0.86

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms