RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 SP140Q13342 867 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 HHATQ5VTY9 493 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 ZNF324BQ6AW86 544 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 UBE2R2Q712K3 238 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TAX1BP1Q86VP1 789 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 VRK3Q8IV63 474 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CENPLQ8N0S6 344 aaPredicted RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 PLD6Q8N2A8 252 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 MAGEC3Q8TD91 643 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 MGARPQ8TDB4 240 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TCP10LQ8TDR4 215 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 SREK1Q8WXA9 508 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TM9SF4Q92544 642 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CXorf40BQ96DE9 158 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 PDLIM5Q96HC4 596 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 UBXN10Q96LJ8 280 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 FER1L6-AS2Q96M78 137 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 PPM1MQ96MI6 270 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 IP6K3Q96PC2 410 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TRAPPC9Q96Q05 1148 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CD180Q99467 661 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 EGFL8Q99944 293 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 MRPL57Q9BQC6 102 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 MRPL46Q9H2W6 279 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TFB2MQ9H5Q4 396 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 IMP3Q9NV31 184 aaKnown RBP11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TMEM216Q9P0N5 145 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 ASF1AQ9Y294 204 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 BTRCQ9Y297 605 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 HEBP2Q9Y5Z4 205 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CDC7O00311 574 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 TM9SF1O15321 606 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PRPF4O43172 522 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 KLHL41O60662 606 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 SMIM24O75264 130 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 WISP3O95389 354 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 ZBTB11O95625 1053 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 SSTR2P30874 369 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 ARL4DP49703 201 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 DLG1Q12959 904 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 GBX1Q14549 363 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 SSPNQ14714 243 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PLCL1Q15111 1095 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 TSNQ15631 228 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PTCHD3Q3KNS1 767 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 UNC5DQ6UXZ4 953 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 MRGPRGQ86SM5 289 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CDH24Q86UP0 819 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 GPSM1Q86YR5 675 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 SPNS2Q8IVW8 549 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 TMEM151BQ8IW70 566 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PARP9Q8IXQ6 854 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 RAB42Q8N4Z0 105 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CLEC1AQ8NC01 280 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 ARMC2Q8NEN0 867 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 OR1L3Q8NH93 324 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 FAM76AQ8TAV0 307 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 MCOLN3Q8TDD5 553 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PPP4R1Q8TF05 950 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 DYDC1Q8WWB3 177 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 TFGQ92734 400 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 KIAA1191Q96A73 305 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CLIP3Q96DZ5 547 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CCDC120Q96HB5 630 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 RMDN2Q96LZ7 410 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 FAM111AQ96PZ2 611 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 FERD3LQ96RJ6 166 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 OR52A5Q9H2C5 316 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 ZNF358Q9NW07 568 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 UTP6Q9NYH9 597 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CD274Q9NZQ7 290 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CPSF2Q9P2I0 782 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 XPR1Q9UBH6 696 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CDYLQ9Y232 598 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 PLLPQ9Y342 182 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 COLEC10Q9Y6Z7 277 aa11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 NSD1Q96L73 2696 aaPredicted RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 FLNAP21333 2647 aaKnown RBP11.94□□□□□ -0.5
CLSTN3-208ENST00000538933 CCDC189A1A4V9 331 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 OR5K3A6NET4 321 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 NCF1BA6NI72 391 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 NCF1CA8MVU1 366 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 H3BQF6 201 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 SLC16A5O15375 505 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 JRKO75564 520 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 TSPAN12O95859 305 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 ENO2P09104 434 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 MYL2P10916 166 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 GFAPP14136 432 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 NCF1P14598 390 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 RPA3P35244 121 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 BDKRB1P46663 353 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 TDGF1P3P51864 188 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 TECRLQ5HYJ1 363 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 KLHL35Q6PF15 583 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 SH2D5Q6ZV89 423 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 ISCA2Q86U28 154 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 ZNF808Q8N4W9 903 aaPredicted RBP11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 PPP1R14CQ8TAE6 165 aa11.93□□□□□ -0.5
CLSTN3-208ENST00000538933 RHEBL1Q8TAI7 183 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms