RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 AP1S2P56377 157 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 MS4A2Q01362 244 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 BIRC2Q13490 618 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 NR6A1Q15406 480 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 ZXDCQ2QGD7 858 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 MUM1Q2TAK8 710 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 C8orf82Q6P1X6 216 aaPredicted RBP11.5□□□□□ -0.57
CLIP1-208ENST00000537004 C19orf48Q6RUI8 117 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 LRRC70Q7Z2Q7 622 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 TRAPPC5Q8IUR0 188 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 MCOLN3Q8TDD5 553 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 TEX37Q96LM6 180 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 NUDT22Q9BRQ3 303 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 CCM2Q9BSQ5 444 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 SLC52A3Q9NQ40 469 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 TRPS1Q9UHF7 1281 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 AHCTF1Q8WYP5 2266 aa11.5□□□□□ -0.57
CLIP1-208ENST00000537004 COL27A1Q8IZC6 1860 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-208ENST00000537004 A6NCN8 305 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 SLC22A3O75751 556 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 GSTM1P09488 218 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 EPORP19235 508 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 TCN1P20061 433 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-208ENST00000537004 ZFP36L2P47974 494 aaKnown RBP11.49□□□□□ -0.57
CLIP1-208ENST00000537004 SLC6A12P48065 614 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 UFM1P61960 85 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 GSTM4Q03013 218 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 RCAN2Q14206 197 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 TAF11Q15544 211 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 PDCD4Q53EL6 469 aaKnown RBP11.49□□□□□ -0.57
CLIP1-208ENST00000537004 IYDQ6PHW0 289 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 C11orf96Q7Z7L8 435 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 FAM156AQ8NDB6 213 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 TSPEARQ8WU66 669 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM159Q96B96 161 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 CRELD1Q96HD1 420 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 NAF1Q96HR8 494 aaKnown RBP11.49□□□□□ -0.57
CLIP1-208ENST00000537004 SLC39A3Q9BRY0 314 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 SEMA6CQ9H3T2 930 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 RMI1Q9H9A7 625 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 POLR1BQ9H9Y6 1135 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 MAP10Q9P2G4 905 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 BCAP29Q9UHQ4 241 aa11.49□□□□□ -0.57
CLIP1-208ENST00000537004 PRAMEF33A0A0G2JMD5 474 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 KRT87PA6NCN2 255 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ULK1O75385 1050 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 BCAS2O75934 225 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 WDR47O94967 919 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 CLDN9O95484 217 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 HOXB3P14651 431 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PNLIPP16233 465 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 CD1CP29017 333 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PREPP48147 710 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 KCNK10P57789 538 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 CFHR1Q03591 330 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 EMX2Q04743 252 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ABRQ12979 859 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 AP5B1Q2VPB7 878 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PTCHD3Q3KNS1 767 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 COQ5Q5HYK3 327 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM220Q6QAJ8 160 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF574Q6ZN55 896 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 RNF165Q6ZSG1 346 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF438Q7Z4V0 828 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 DHDDSQ86SQ9 333 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 LRRTM4Q86VH4 590 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 RASGRP3Q8IV61 690 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 RCBTB1Q8NDN9 531 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 DNAJC9Q8WXX5 260 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SPDL1Q96EA4 605 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZNF570Q96NI8 536 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SLC29A3Q9BZD2 475 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ACTR8Q9H981 624 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 IL1RL2Q9HB29 575 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 FARSBQ9NSD9 589 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ZIM2Q9NZV7 527 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 TMEM9Q9P0T7 183 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SUCOQ9UBS9 1254 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 CCL27Q9Y4X3 112 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 BOD1L1Q8NFC6 3051 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 FAM208BQ5VWN6 2430 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 IGSF10Q6WRI0 2623 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 A0A1W2PP18 115 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SLC5A10A0PJK1 596 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 H3BNX3 289 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 MANBAO00462 879 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ACOT8O14734 319 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 KMOO15229 486 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 RGS14O43566 566 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 VEGFDO43915 354 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PSIP1O75475 530 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 RPSAP08865 295 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 ITPKBP27987 946 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 PBLDP30039 288 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 LSSP48449 732 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 POLR2JP52435 117 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SLC7A2P52569 658 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 HHEXQ03014 270 aa11.48□□□□□ -0.57
CLIP1-208ENST00000537004 TRIM25Q14258 630 aaKnown RBP11.48□□□□□ -0.57
CLIP1-208ENST00000537004 SAMD4BQ5PRF9 694 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms