RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SUPT20HL2P0C7V6 817 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 C8orf89P0DMQ9 161 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 CPA3P15088 417 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ADRA2CP18825 462 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 MUTP22033 750 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 PRKACGP22612 351 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 PIK3R1P27986 724 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 KRT2P35908 639 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 HNF4AP41235 474 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SNU13P55769 128 aaKnown RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 TMEM50BP56557 158 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 GSCP56915 257 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 LMO4P61968 165 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TEFQ10587 303 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ELAVL2Q12926 359 aaKnown RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 TRIM29Q14134 588 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 HERC3Q15034 1050 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 NECTIN1Q15223 517 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 MAPK11Q15759 364 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SMU1Q2TAY7 513 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 FAM46CQ5VWP2 391 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TMEM207Q6UWW9 146 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SLC24A5Q71RS6 500 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 PTAR1Q7Z6K3 402 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 GLRX5Q86SX6 157 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 CCDC170Q8IYT3 715 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 FAM9BQ8IZU0 186 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 PRSS35Q8N3Z0 413 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ANKRD13CQ8N6S4 541 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 MSANTD4Q8NCY6 345 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 NUP37Q8NFH4 326 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 OR10Q1Q8NGQ4 319 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 NCOA7Q8NI08 942 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TEKT1Q969V4 418 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ST6GALNAC6Q969X2 333 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 C4orf45Q96LM5 186 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ZNF300Q96RE9 604 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 LPAR4Q99677 370 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 MAP3K3Q99759 626 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 MLPHQ9BV36 600 aaPredicted RBP2.39□□□□□ -2.03
CD44-238ENST00000534296 DPEP2Q9H4A9 486 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 ACTL8Q9H568 366 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TLE6Q9H808 572 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 SEPT10Q9P0V9 454 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TRPC4Q9UBN4 977 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 IL36AQ9UHA7 158 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 CDH7Q9ULB5 785 aa2.39□□□□□ -2.03
CD44-238ENST00000534296 TRAV18A0A075B6X5 111 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 A0A0U1RQK1 487 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 C13orf42A0A1B0GVH6 325 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ZNF320A2RRD8 509 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TCP10L2B9ZVM9 353 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 E5RGE8 158 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 FAM86B1E9PN63 330 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 NPIPA3F8WFD2 350 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 PI4K2BG5E9Z4 385 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 SLC1A7O00341 560 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ATP6AP2O75787 350 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 GRAP2O75791 330 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 KRT33AO76009 404 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 SIX3O95343 332 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 DUS4LO95620 317 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 GAS8O95995 478 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 FAM86B2P0C5J1 330 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 SP9P0CG40 484 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ACADSP16219 412 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RPL35AP18077 110 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 ITIH1P19827 911 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 AADACP22760 399 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CCND3P30281 292 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 COPB2P35606 906 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TCF7P36402 384 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 OR3A3P47888 321 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 NOVP48745 357 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 B3GALT5-AS1P59052 145 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 KRT83P78385 493 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 AKAP17AQ02040 695 aaKnown RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 FOLH1Q04609 750 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RASGEF1BQ0VAM2 473 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ABRQ12979 859 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RCN2Q14257 317 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 EFTUD2Q15029 972 aaKnown RBP eCLIP2.38□□□□□ -2.03
CD44-238ENST00000534296 PPA1Q15181 289 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ACKR1Q16570 336 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 FUT11Q495W5 492 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ANKRD20A4Q4UJ75 823 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ANKRD20A8PQ5CZ79 823 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ANKRD20A2Q5SQ80 823 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 MPP7Q5T2T1 576 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ANKRD20A1Q5TYW2 823 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 LRRC38Q5VT99 294 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 ANKRD20A3Q5VUR7 823 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 TXNRD3NBQ6F5E7 133 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CYB5D1Q6P9G0 228 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 PAQR6Q6TCH4 344 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 RAPH1Q70E73 1250 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 OTOAQ7RTW8 1153 aa2.38□□□□□ -2.03
CD44-238ENST00000534296 CCDC60Q8IWA6 550 aaPredicted RBP2.38□□□□□ -2.03
CD44-238ENST00000534296 RCOR2Q8IZ40 523 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms