RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 DEFB109BQ30KR1 87 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 TMEM214Q6NUQ4 689 aaKnown RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 SLCO4C1Q6ZQN7 724 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 OVCH1Q7RTY7 1134 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 LRRC70Q7Z2Q7 622 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 APOBEC4Q8WW27 367 aaKnown RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 CAVIN3Q969G5 261 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 MTBPQ96DY7 904 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 CAPS2Q9BXY5 557 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 ZNF304Q9HCX3 659 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 PSMC3IPQ9P2W1 217 aaPredicted RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 CTSFQ9UBX1 484 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 NXT1Q9UKK6 140 aaKnown RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 PTRH2Q9Y3E5 179 aaKnown RBP14.31□□□□□ -0.12
CPSF1-208ENST00000532560 MAU2Q9Y6X3 613 aa14.31□□□□□ -0.12
CPSF1-208ENST00000532560 H3BQF6 201 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 FOXS1O43638 330 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 OR1F1O43749 312 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 KLK8O60259 260 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 STATHP02808 62 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 COL6A2P12110 1019 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 FBLP22087 321 aaKnown RBP14.3□□□□□ -0.12
CPSF1-208ENST00000532560 CXCR2P25025 360 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 CCR10P46092 362 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 PWP1Q13610 501 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 SSPNQ14714 243 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 NKG7Q16617 165 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 TSNAXIP1Q2TAA8 658 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 TUBB8Q3ZCM7 444 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 FBXO48Q5FWF7 155 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 TECRLQ5HYJ1 363 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ATG9BQ674R7 924 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 TIFABQ6ZNK6 161 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 RAB43Q86YS6 212 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 PLD6Q8N2A8 252 aaKnown RBP14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ZNF740Q8NDX6 193 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 UBLCP1Q8WVY7 318 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-208ENST00000532560 SLC13A3Q8WWT9 602 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 SLC39A7Q92504 469 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 SPSB2Q99619 263 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ARHGAP9Q9BRR9 750 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 CD244Q9BZW8 370 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 PITHD1Q9GZP4 211 aaPredicted RBP14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ADNPQ9H2P0 1102 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 EHD1Q9H4M9 534 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 PPCSQ9HAB8 311 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ZFP69BQ9UJL9 534 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ADAM21Q9UKJ8 722 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 MAN2B2Q9Y2E5 1009 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 KCNMB2Q9Y691 235 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 ATMQ13315 3056 aa14.3□□□□□ -0.12
CPSF1-208ENST00000532560 IGLV3-12A0A075B6K2 115 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 IQANK1A0A1B0GTG1 560 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 VSTM2BA6NLU5 285 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 CLGNO14967 610 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 NDUFS4O43181 175 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 CCNT2O60583 730 aaKnown RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 NSA2O95478 260 aaKnown RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 UMODP07911 640 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 RBP1P09455 135 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 ATXN8OSP0DMR3 200 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 C1GALT1C1LP0DN25 315 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 VARSP26640 1264 aaKnown RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 GSTM2P28161 218 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 POLE2P56282 527 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 RGS1Q08116 209 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 SETDB1Q15047 1291 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 MRGPREQ86SM8 312 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 AMER3Q8N944 861 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 SNX31Q8N9S9 440 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 ANKRD53Q8N9V6 530 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 NT5CQ8TCD5 201 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 COL26A1Q96A83 441 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 ESAMQ96AP7 390 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 WDR34Q96EX3 536 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 IP6K3Q96PC2 410 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 CCDC77Q9BR77 488 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 GEMIN8Q9NWZ8 242 aaKnown RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 COPG2Q9UBF2 871 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 ZNF282Q9UDV7 671 aaPredicted RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 TUBD1Q9UJT1 453 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 MRPS2Q9Y399 296 aaKnown RBP14.29□□□□□ -0.12
CPSF1-208ENST00000532560 MAP4K5Q9Y4K4 846 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 ASB1Q9Y576 335 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 SLC22A7Q9Y694 548 aa14.29□□□□□ -0.12
CPSF1-208ENST00000532560 A0A0A6YYC8 382 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 H0YIG0 161 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 I3L1I5 382 aaPredicted RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 RFPL1O75677 317 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 FAM87AP0C7U9 286 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 GFAPP14136 432 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 EPORP19235 508 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 AVPR1BP47901 424 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 AGTR2P50052 363 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 ALDH18A1P54886 795 aaKnown RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 SNRPNP63162 240 aaKnown RBP14.28□□□□□ -0.12
CPSF1-208ENST00000532560 OCA2Q04671 838 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 PCDH1Q08174 1060 aa14.28□□□□□ -0.12
CPSF1-208ENST00000532560 LY6DQ14210 128 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms