RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 KRTCAP3Q53RY4 240 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 ARMC3Q5W041 872 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 SPINK14Q6IE38 97 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 PCGF5Q86SE9 256 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 CAND1Q86VP6 1230 aaKnown RBP22.21■■□□□ 1.15
CPSF1-202ENST00000527827 PDSS2Q86YH6 399 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 SPPL2CQ8IUH8 684 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 KCNJ9Q92806 393 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 MAGED4Q96JG8 741 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 UTP23Q9BRU9 249 aaKnown RBP22.21■■□□□ 1.15
CPSF1-202ENST00000527827 MMP25Q9NPA2 562 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 SH2B3Q9UQQ2 575 aa22.21■■□□□ 1.15
CPSF1-202ENST00000527827 CTAGE9A4FU28 777 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 MAGEA6P43360 314 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 SMSP52788 366 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 TBPL1P62380 186 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 ALDH6A1Q02252 535 aaKnown RBP22.2■■□□□ 1.14
CPSF1-202ENST00000527827 DHX34Q14147 1143 aaKnown RBP22.2■■□□□ 1.14
CPSF1-202ENST00000527827 CASC4Q6P4E1 433 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 UBE2R2Q712K3 238 aaPredicted RBP22.2■■□□□ 1.14
CPSF1-202ENST00000527827 PIWIL4Q7Z3Z4 852 aaKnown RBP22.2■■□□□ 1.14
CPSF1-202ENST00000527827 KCT2Q8NC54 265 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 ZCCHC10Q8TBK6 192 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 CD200R1Q8TD46 325 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 THAP11Q96EK4 314 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 CCDC138Q96M89 665 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 FRMD6Q96NE9 622 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 GPR21Q99679 349 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 CCDC177Q9NQR7 707 aaPredicted RBP22.2■■□□□ 1.14
CPSF1-202ENST00000527827 MEMO1Q9Y316 297 aa22.2■■□□□ 1.14
CPSF1-202ENST00000527827 NPIPA5E9PKD4 350 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 RDH16O75452 317 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 FGGP02679 453 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 EEF1DP29692 281 aaKnown RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 COILP38432 576 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 KIR3DL1P43629 444 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 RHAGQ02094 409 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 TRIP13Q15645 432 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 SFT2D3Q587I9 215 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 ANKRD22Q5VYY1 191 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 PAPD4Q6PIY7 484 aaKnown RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 NCCRP1Q6ZVX7 275 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 SIAH3Q8IW03 269 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 CPNE9Q8IYJ1 553 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 CAMKVQ8NCB2 501 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 ZNF669Q96BR6 464 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 MTFMTQ96DP5 389 aaKnown RBP22.19■■□□□ 1.14
CPSF1-202ENST00000527827 ANKHQ9HCJ1 492 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 NPIPA1Q9UND3 350 aa22.19■■□□□ 1.14
CPSF1-202ENST00000527827 ZCWPW2A0A1B0GU75 182 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 FAM237BA0A1B0GVD1 139 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 FEZF1A0PJY2 475 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 LCMT2O60294 686 aaKnown RBP22.18■■□□□ 1.14
CPSF1-202ENST00000527827 CLDN14O95500 239 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 CD46P15529 392 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 SLC26A11Q86WA9 606 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 PLPP5Q8NEB5 264 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 MAIP1Q8WWC4 291 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 CCDC68Q9H2F9 335 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 LANCL2Q9NS86 450 aa22.18■■□□□ 1.14
CPSF1-202ENST00000527827 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.17■■□□□ 1.14
CPSF1-202ENST00000527827 GABRR3A8MPY1 467 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ZNHIT1O43257 154 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 NEURL1O76050 574 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 MLYCDO95822 493 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 SLC1A2P43004 574 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 VPS41P49754 854 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 SARNPP82979 210 aaKnown RBP22.17■■□□□ 1.14
CPSF1-202ENST00000527827 THOC5Q13769 683 aaKnown RBP22.17■■□□□ 1.14
CPSF1-202ENST00000527827 USP10Q14694 798 aaKnown RBP22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ABRAXAS2Q15018 415 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 NSDHLQ15738 373 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 GALNTL5Q7Z4T8 443 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ASPGQ86U10 573 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 TMEM178AQ8NBL3 297 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 TSLPQ969D9 159 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 LPAR4Q99677 370 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 RBCK1Q9BYM8 510 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 SAMD15Q9P1V8 674 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ITGB1BP2Q9UKP3 347 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ADAMTS6Q9UKP5 1117 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 NAALAD2Q9Y3Q0 740 aa22.17■■□□□ 1.14
CPSF1-202ENST00000527827 ASNA1O43681 348 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 CDC123O75794 336 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SP1P08047 785 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SSTR2P30874 369 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 KRTAP10-9P60411 292 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 GPS1Q13098 491 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 PNPLA5Q7Z6Z6 429 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-202ENST00000527827 CHERPQ8IWX8 916 aaKnown RBP22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SLC5A8Q8N695 610 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SPC24Q8NBT2 197 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SLC13A3Q8WWT9 602 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 PEX11GQ96HA9 241 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 TRIM51Q9BSJ1 452 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 PCBD2Q9H0N5 130 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 PDE10AQ9Y233 779 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 SLC22A7Q9Y694 548 aa22.16■■□□□ 1.14
CPSF1-202ENST00000527827 MED13LQ71F56 2210 aa22.15■■□□□ 1.14
CPSF1-202ENST00000527827 MAGEB16A2A368 324 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms