RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ARL10Q8N8L6 244 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 RSC1A1Q92681 617 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 ZUFSPQ96AP4 578 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 TSSK3Q96PN8 268 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 CENPKQ9BS16 269 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 SLC52A3Q9NQ40 469 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 AP1M2Q9Y6Q5 423 aa20.13■□□□□ 0.81
VPS28-208ENST00000527797 ARHGEF17Q96PE2 2063 aaPredicted RBP20.12■□□□□ 0.81
VPS28-208ENST00000527797 A0A0J9YY10 115 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 A0A1W2PP18 115 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 OR2A25A4D2G3 310 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 SEMA3DO95025 777 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 SERPIND1P05546 499 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 TACR1P25103 407 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 EPHA8P29322 1005 aaPredicted RBP20.12■□□□□ 0.81
VPS28-208ENST00000527797 TIA1P31483 386 aaKnown RBP eCLIP20.12■□□□□ 0.81
VPS28-208ENST00000527797 CLNS1AP54105 237 aaKnown RBP20.12■□□□□ 0.81
VPS28-208ENST00000527797 RPS15AP62244 130 aaKnown RBP20.12■□□□□ 0.81
VPS28-208ENST00000527797 RAE1P78406 368 aaKnown RBP20.12■□□□□ 0.81
VPS28-208ENST00000527797 COQ5Q5HYK3 327 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 GALNT18Q6P9A2 607 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 COMMD6Q7Z4G1 85 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 DSELQ8IZU8 1212 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 ARHGAP24Q8N264 748 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 PCYOX1LQ8NBM8 494 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 TRPV3Q8NET8 790 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 CLHC1Q8NHS4 586 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 CREB3L4Q8TEY5 395 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 PCDHGA4Q9Y5G9 962 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 KLK4Q9Y5K2 254 aa20.12■□□□□ 0.81
VPS28-208ENST00000527797 TDRD6O60522 2096 aaKnown RBP20.11■□□□□ 0.81
VPS28-208ENST00000527797 PCM1Q15154 2024 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 H0YHG0 523 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 YKT6O15498 198 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 PCDH7O60245 1069 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 TBX6O95947 436 aaPredicted RBP20.11■□□□□ 0.81
VPS28-208ENST00000527797 PROS1P07225 676 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 ANXA4P09525 319 aaPredicted RBP20.11■□□□□ 0.81
VPS28-208ENST00000527797 PGM1P36871 562 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 RAP1GDS1P52306 607 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 F2RL3Q96RI0 385 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 MMADHCQ9H3L0 296 aaPredicted RBP20.11■□□□□ 0.81
VPS28-208ENST00000527797 FSCN3Q9NQT6 498 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 POMT2Q9UKY4 750 aa20.11■□□□□ 0.81
VPS28-208ENST00000527797 GNG14A0A1W2PPG7 69 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 GIMD1P0DJR0 217 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 HOXB3P14651 431 aaPredicted RBP20.1■□□□□ 0.81
VPS28-208ENST00000527797 CYP4F3Q08477 520 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 ZIC1Q15915 447 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 FCRL6Q6DN72 434 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 DEFB107AQ8IZN7 70 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 KRTCAP2Q8N6L1 136 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 UTP4Q969X6 686 aaKnown RBP20.1■□□□□ 0.81
VPS28-208ENST00000527797 VPS33AQ96AX1 596 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 EGLN2Q96KS0 407 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 CLMPQ9H6B4 373 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 CAPN10Q9HC96 672 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 NLGN3Q9NZ94 848 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 LRIT1Q9P2V4 623 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 LEF1Q9UJU2 399 aaPredicted RBP20.1■□□□□ 0.81
VPS28-208ENST00000527797 SLC6A14Q9UN76 642 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 RNF215Q9Y6U7 377 aa20.1■□□□□ 0.81
VPS28-208ENST00000527797 CFLARO15519 480 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 NDUFS4O43181 175 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 NUDT21O43809 227 aaKnown RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 PRMT3O60678 531 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 IL6P05231 212 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 PRPS1L1P21108 318 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 ASMTP46597 345 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 CAPZBP47756 277 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 LSSP48449 732 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 EPHA4P54764 986 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 RELAQ04206 551 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 TIGD2Q4W5G0 525 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 TMEM35AQ53FP2 167 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 FBXO42Q6P3S6 717 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 HACD2Q6Y1H2 254 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 ZNF438Q7Z4V0 828 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 RETREG3Q86VR2 466 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 WDR48Q8TAF3 677 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 BAHD1Q8TBE0 780 aaPredicted RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 RGMAQ96B86 450 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 ROPN1LQ96C74 230 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 THAP11Q96EK4 314 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 TMEM74Q96NL1 305 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 THTPAQ9BU02 230 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 DUSP23Q9BVJ7 150 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 GAREM1Q9H706 876 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 MCM8Q9UJA3 840 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 TNRC6BQ9UPQ9 1833 aaKnown RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 EEDO75530 441 aaKnown RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 KLK1P06870 262 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 ALPPL2P10696 532 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 PPM1FP49593 454 aaPredicted RBP20.09■□□□□ 0.81
VPS28-208ENST00000527797 PPP1CAP62136 330 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 TRIM61Q5EBN2 209 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 PAGE2Q7Z2X7 111 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 KANSL1Q7Z3B3 1105 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 GATAD2AQ86YP4 633 aa20.09■□□□□ 0.81
VPS28-208ENST00000527797 SLC35F3Q8IY50 421 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms