RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CLDN9	O95484	217 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	CCNG1	P51959	295 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	LCP2	Q13094	533 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	TRAF3	Q13114	568 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	MUM1	Q2TAK8	710 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	MED27	Q6P2C8	311 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	ZFAND4	Q86XD8	727 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	DSEL	Q8IZU8	1212 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	ANKRD53	Q8N9V6	530 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	SLC13A3	Q8WWT9	602 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	SREK1	Q8WXA9	508 aa	Known RBP	19.79	■□□□□ 0.76
CD44-222	ENST00000526025	REPS1	Q96D71	796 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	CLIP3	Q96DZ5	547 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	NSUN5	Q96P11	429 aa	Known RBP	19.79	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF382	Q96SR6	550 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	DPH1	Q9BZG8	443 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	SLC7A5P2	Q9GIP4	190 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	CUTC	Q9NTM9	273 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	RUVBL1	Q9Y265	456 aa	Known RBP	19.79	■□□□□ 0.76
CD44-222	ENST00000526025	PCDHGA11	Q9Y5H2	935 aa		19.79	■□□□□ 0.76
CD44-222	ENST00000526025	FREM2	Q5SZK8	3169 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025		A0A1B0GX78	115 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025		H0YIV9	168 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	DSCR3	O14972	297 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	P2RX6	O15547	441 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	RAD1	O60671	282 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	CLEC3A	O75596	197 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ONECUT2	O95948	504 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	NTRK1	P04629	796 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	EIF2S1	P05198	315 aa	Known RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	SERPINA6	P08185	405 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	DHRS4L1	P0CG22	281 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	HPD	P32754	393 aa	Predicted RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ATP1A2	P50993	1020 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	MAGOH	P61326	146 aa	Known RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	RGS1	Q08116	209 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ABHD18	Q0P651	414 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	FAM53B	Q14153	422 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	RBBP5	Q15291	538 aa	Known RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	NDUFA9	Q16795	377 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	PRAMEF17	Q5VTA0	474 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF385C	Q66K41	422 aa	Predicted RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	FRMD7	Q6ZUT3	714 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	TIPARP	Q7Z3E1	657 aa	Known RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	C10orf107	Q8IVU9	208 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	GOLGA6L1	Q8N7Z2	621 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	SLC38A9	Q8NBW4	561 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	GALNT6	Q8NCL4	622 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	OR52B6	Q8NGF0	335 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	CREB3L4	Q8TEY5	395 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ATP6V1E2	Q96A05	226 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ATP6V1G3	Q96LB4	118 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	C10orf90	Q96M02	699 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	GBP5	Q96PP8	586 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	TRMO	Q9BU70	441 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	DRC3	Q9H069	523 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	GSTO2	Q9H4Y5	243 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	SEMA4B	Q9NPR2	832 aa	Predicted RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	TRPS1	Q9UHF7	1281 aa		19.78	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF490	Q9ULM2	529 aa	Predicted RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	URB1	O60287	2271 aa	Known RBP	19.78	■□□□□ 0.76
CD44-222	ENST00000526025	FRY	Q5TBA9	3013 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	ANKRD11	Q6UB99	2663 aa	Predicted RBP	19.77	■□□□□ 0.76
CD44-222	ENST00000526025	MEN1	O00255	615 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	BIRC5	O15392	142 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	NDUFS4	O43181	175 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	SASH3	O75995	380 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	KLK3	P07288	261 aa	Predicted RBP	19.77	■□□□□ 0.76
CD44-222	ENST00000526025	BPGM	P07738	259 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	CCNYL3	P0C7X3	344 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	NAGLU	P54802	743 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	PKNOX1	P55347	436 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	GPS2	Q13227	327 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	HKDC1	Q2TB90	917 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	TMEM214	Q6NUQ4	689 aa	Known RBP	19.77	■□□□□ 0.76
CD44-222	ENST00000526025	PRMT9	Q6P2P2	845 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	PROSER1	Q86XN7	944 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	HOMEZ	Q8IX15	550 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	ZCCHC14	Q8WYQ9	949 aa	Known RBP	19.77	■□□□□ 0.76
CD44-222	ENST00000526025	NKD1	Q969G9	470 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	ARL8A	Q96BM9	186 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	C17orf62	Q9BQA9	187 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	SLC6A16	Q9GZN6	736 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	STARD5	Q9NSY2	213 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	TXLNG	Q9NUQ3	528 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	ZNF446	Q9NWS9	450 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	PADI1	Q9ULC6	663 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	PPT2	Q9UMR5	302 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	SLC22A7	Q9Y694	548 aa		19.77	■□□□□ 0.76
CD44-222	ENST00000526025	URAD	A6NGE7	173 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	ANKDD1B	A6NHY2	528 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	HMGB1P1	B2RPK0	211 aa	Predicted RBP	19.76	■□□□□ 0.75
CD44-222	ENST00000526025	ALDH3A1	P30838	453 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	SERPINB5	P36952	375 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	STAT5A	P42229	794 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	PIK3CB	P42338	1070 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	SERPINB4	P48594	390 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	CDH13	P55290	713 aa		19.76	■□□□□ 0.75
CD44-222	ENST00000526025	RBBP7	Q16576	425 aa		19.76	■□□□□ 0.75

Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms