RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 KCNK2O95069 426 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 IGSF6O95976 241 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 JUPP14923 745 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 POU1F1P28069 291 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PFN3P60673 137 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 SPIBQ01892 262 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ST3GAL4Q11206 333 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 DMC1Q14565 340 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TCTN1Q2MV58 587 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ATAD3BQ5T9A4 648 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 UBE2UQ5VVX9 321 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 DESI1Q6ICB0 168 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 LILRA3Q8N6C8 439 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 OR2AP1Q8NGE2 309 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 OR9Q2Q8NGE9 314 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 TBC1D20Q96BZ9 403 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 PITX2Q99697 317 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 IMPAD1Q9NX62 359 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 ACSL6Q9UKU0 697 aa8.93□□□□□ -0.98
LIMCH1-215ENST00000512632 LINC00854A0A1B0GVQ3 168 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 J3KTA2 159 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF821O75541 412 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 GCM2O75603 506 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 GJA1P17302 382 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 S100A5P33763 92 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 PPIGQ13427 754 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 COX20Q5RI15 118 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF605Q86T29 641 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 DNAJC22Q8N4W6 341 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF461Q8TAF7 563 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ADAMTS19Q8TE59 1207 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CAPSLQ8WWF8 208 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SIGLEC11Q96RL6 698 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 TMEM121BQ9BXQ6 578 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZDHHC6Q9H6R6 413 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 RNF186Q9NXI6 227 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 NDUFAF4Q9P032 175 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SPASTQ9UBP0 616 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 OGDHLQ9ULD0 1010 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 MGAT4DA6NG13 374 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 TMEM202A6NGA9 273 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SAP18O00422 153 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SEMG1P04279 462 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CKMP06732 381 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 C8GP07360 202 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CYP2A7P20853 494 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 GPNMBQ14956 572 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 VEPH1Q14D04 833 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 MED22Q15528 200 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CCDC92Q53HC0 331 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 IER5LQ5T953 404 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM180BQ6P0A1 224 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ZNF783Q6ZMS7 281 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 PARP16Q8N5Y8 322 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 STARD8Q92502 1023 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SCRN2Q96FV2 425 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SGK2Q9HBY8 427 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 STARD7Q9NQZ5 370 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 RHCGQ9UBD6 479 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 LYVE1Q9Y5Y7 322 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CLCA1A8K7I4 914 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CBSLP0DN79 551 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 HLA-EP13747 358 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 HOXB6P17509 224 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CBSP35520 551 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 GGT2P36268 569 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CYP4F8P98187 520 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 RGNQ15493 299 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 METTL2BQ6P1Q9 378 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 BBS7Q8IWZ6 715 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CMTM8Q8IZV2 173 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 LGI4Q8N135 537 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SYNPOQ8N3V7 929 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 OR5AK3PQ8NH89 298 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 MYDGFQ969H8 173 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 DOHHQ9BU89 302 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 BRD9Q9H8M2 597 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 FAM120CQ9NX05 1096 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 B4GALT6Q9UBX8 382 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 DUSP12Q9UNI6 340 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 TMEM229AB2RXF0 380 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CTDSP2O14595 271 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ARHGEF15O94989 841 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 PREPP48147 710 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 GGTA1PQ4G0N0 100 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CCBE1Q6UXH8 406 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SLC46A3Q7Z3Q1 461 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 TMEM150AQ86TG1 271 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 THOC6Q86W42 341 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CYP4Z2PQ8N1L4 340 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 CBARPQ8N350 705 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 C11orf65Q8NCR3 313 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 VPS37AQ8NEZ2 397 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 ATL1Q8WXF7 558 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 POP5Q969H6 163 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 SCLYQ96I15 445 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 OR5M11Q96RB7 305 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 KCNS3Q9BQ31 491 aa8.92□□□□□ -0.98
LIMCH1-215ENST00000512632 TCF25Q9BQ70 676 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms