RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TRMOQ9BU70 441 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 MID1IP1Q9NPA3 183 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 ANGPTL2Q9UKU9 493 aa28.27■■■□□ 2.12
LIMCH1-211ENST00000509638 DXOO77932 396 aaKnown RBP28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 SERPIND1P05546 499 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC35G6P0C7Q6 338 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 PCNAP12004 261 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 BGNP21810 368 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 PKNOX1P55347 436 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 FAM219BQ5XKK7 198 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 LAS2Q8IYD9 372 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 LSMEM2Q8N112 164 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 TTLQ8NG68 377 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 OR7G3Q8NG95 312 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 OR6Y1Q8NGX8 325 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC13A3Q8WWT9 602 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 CNDP1Q96KN2 507 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 ULBP3Q9BZM4 244 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 SHCBP1LQ9BZQ2 653 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 TRPS1Q9UHF7 1281 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 RUVBL1Q9Y265 456 aaKnown RBP28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 AHCTF1Q8WYP5 2266 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 FER1L5A0AVI2 2057 aa28.26■■■□□ 2.11
LIMCH1-211ENST00000509638 CDRT15L2A8MXV6 281 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 H0YIV9 168 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 FFAR3O14843 346 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 GPR42O15529 346 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 ESRRBO95718 433 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 SERPINE1P05121 402 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 GRM7Q14831 915 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 ZRSR2Q15696 482 aaKnown RBP28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 CES4AQ5XG92 561 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 TLDC1Q6P9B6 456 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 CDYL2Q8N8U2 506 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 MAGEB10Q96LZ2 347 aaPredicted RBP28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 ENAMQ9NRM1 1142 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 PCDHGA11Q9Y5H2 935 aa28.25■■■□□ 2.11
LIMCH1-211ENST00000509638 FITM1A5D6W6 292 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 ZNF749O43361 778 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 CHRNGP07510 517 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 ZNF28P17035 718 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 GSTM2P28161 218 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 PRTGQ2VWP7 1150 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 VN1R5Q7Z5H4 357 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 TTC29Q8NA56 475 aaPredicted RBP28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 CAMKVQ8NCB2 501 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 TM4SF19Q96DZ7 209 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 NLNQ9BYT8 704 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 PRM3Q9NNZ6 103 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 PCDHB3Q9Y5E6 796 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 PCDHGA7Q9Y5G6 932 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 ANKDD1BA6NHY2 528 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 NVLO15381 856 aaKnown RBP28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 KIAA0754O94854 1291 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 CHN1P15882 459 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC5A2P31639 672 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 ARRB2P32121 409 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 SERPINB5P36952 375 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 DDX39BQ13838 428 aaKnown RBP28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 TRPV3Q8NET8 790 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 CREB3L4Q8TEY5 395 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 CCT6BQ92526 530 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 REPS1Q96D71 796 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 SEC16BQ96JE7 1060 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 KCNA7Q96RP8 456 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 B3GNT4Q9C0J1 378 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 RHBGQ9H310 441 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 ACTR5Q9H9F9 607 aaPredicted RBP28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 THSD1Q9NS62 852 aa28.24■■■□□ 2.11
LIMCH1-211ENST00000509638 TXNDC9O14530 226 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 CAPN1P07384 714 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 ARL13AQ5H913 290 aaPredicted RBP28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 TTC19Q6DKK2 380 aaPredicted RBP28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 C10orf90Q96M02 699 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 NDC1Q9BTX1 674 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC7A5P2Q9GIP4 190 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 TNFRSF12AQ9NP84 129 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 SRPK3Q9UPE1 567 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 CHD8Q9HCK8 2581 aa28.23■■■□□ 2.11
LIMCH1-211ENST00000509638 CELSR3Q9NYQ7 3312 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 HYKKA2RU49 373 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 CPNE3O75131 537 aaKnown RBP28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 STK17BO94768 372 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 NTRK1P04629 796 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 ENO1P06733 434 aaKnown RBP28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 RGS1Q08116 209 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 PWP1Q13610 501 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 CUZD1Q86UP6 607 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 HUS1BQ8NHY5 278 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 MTERF1Q99551 399 aaKnown RBP28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 SLC29A3Q9BZD2 475 aa28.22■■■□□ 2.11
LIMCH1-211ENST00000509638 CLEC3AO75596 197 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 GRK2P25098 689 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 GCGRP47871 477 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 TCHHL1Q5QJ38 904 aaPredicted RBP28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 FRG2Q64ET8 278 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 RNF175Q8N4F7 328 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 KCT2Q8NC54 265 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 ZCCHC10Q8TBK6 192 aa28.21■■■□□ 2.11
LIMCH1-211ENST00000509638 WDR20Q8TBZ3 569 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms