RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 FOPNLQ96NB1 174 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 DHRS4Q9BTZ2 278 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM168Q9H0V1 697 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CHRDQ9H2X0 955 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 XKR8Q9H6D3 395 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 PPCSQ9HAB8 311 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 PLSCR3Q9NRY6 295 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 THADAQ6YHU6 1953 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SPTBP11277 2137 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 DENND4AQ7Z401 1863 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 IGHV1OR15-9A0A0B4J2B8 117 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC35G4P0C7Q5 338 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 DGKAP23743 735 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 STX1BP61266 288 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ACVR1Q04771 509 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MERTKQ12866 999 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 FASTKQ14296 549 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 OR4D1Q15615 310 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 STK11Q15831 433 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SYT16Q17RD7 645 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM52BQ4KMG9 183 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ABRAXAS1Q6UWZ7 409 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 RAB44Q7Z6P3 723 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 LRRTM4Q86VH4 590 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 FBXO39Q8N4B4 442 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM46DQ8NEK8 389 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MTFMTQ96DP5 389 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 C12orf66Q96MD2 445 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 C14orf119Q9NWQ9 140 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 WSB2Q9NYS7 404 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 IKZF3Q9UKT9 509 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 PCDHB1Q9Y5F3 818 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 R4GN57 208 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MUC6Q6W4X9 2439 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CENPXA8MT69 81 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 PLIN3O60664 434 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 MYF5P13349 255 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 IDO1P14902 403 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FASP25445 335 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 PSMA4P25789 261 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 IL5RAQ01344 420 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SELENBP1Q13228 472 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SPCS2Q15005 226 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 TYSND1Q2T9J0 566 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZFP69Q49AA0 526 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZDHHC20Q5W0Z9 365 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 KIAA1161Q6NSJ0 714 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZCCHC8Q6NZY4 707 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SUSD1Q6UWL2 747 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FAM20CQ8IXL6 584 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CBARPQ8N350 705 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 OR10G6Q8NH81 332 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 MZB1Q8WU39 189 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ASZ1Q8WWH4 475 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CDK15Q96Q40 435 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 EXOSC4Q9NPD3 245 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 RAD18Q9NS91 495 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 KCTD5Q9NXV2 234 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 IFRD1O00458 451 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF217O75362 1048 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 STATHP02808 62 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 SERPIND1P05546 499 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FGF3P11487 239 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ARRB2P32121 409 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 KPNA2P52292 529 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CD83Q01151 205 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FZD5Q13467 585 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 ENPP2Q13822 863 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CCSMST1Q4G0I0 132 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 KIAA0895LQ68EN5 471 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 TTC23LQ6PF05 361 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CNTN4Q8IWV2 1026 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 LILRB4Q8NHJ6 448 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 TRPC4APQ8TEL6 797 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 OR1E3Q8WZA6 343 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 EDAQ92838 391 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 MUS81Q96NY9 551 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 NSUN5Q96P11 429 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 CCM2Q9BSQ5 444 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 RTKNQ9BST9 563 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 GATA5Q9BWX5 397 aaPredicted RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 TRIM54Q9BYV2 358 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 EPB41L1Q9H4G0 881 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 COPG2Q9UBF2 871 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 KLHL3Q9UH77 587 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 PPIL1Q9Y3C6 166 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 A0A087X1B8 175 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FFAR3O14843 346 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 GPR42O15529 346 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 XPNPEP2O43895 674 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 APOA1P02647 267 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 FDXRP22570 491 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 RPIAP49247 311 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 AKR1D1P51857 326 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 APOFQ13790 326 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 LYPLAL1Q5VWZ2 237 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 GALNT5Q7Z7M9 940 aa8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 NKAPQ8N5F7 415 aaKnown RBP8.38□□□□□ -1.07
LIMCH1-209ENST00000509277 PCYOX1LQ8NBM8 494 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms