RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 IGSF11Q5DX21 431 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 TMEM211Q6ICI0 200 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 PAMR1Q6UXH9 720 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 NBPF5PQ86XG9 351 aaPredicted RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 RCOR2Q8IZ40 523 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 FAM9BQ8IZU0 186 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 NME8Q8N427 588 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 RYBPQ8N488 228 aaPredicted RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 TEX19Q8NA77 164 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 UCMAQ8WVF2 138 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 SNRNP27Q8WVK2 155 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 KCNE4Q8WWG9 221 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 SPACA9Q96E40 222 aaPredicted RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 UBA5Q9GZZ9 404 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 EIF2B3Q9NR50 452 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 ZNF275Q9NSD4 429 aaPredicted RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 CLEC4EQ9ULY5 219 aa1.88□□□□□ -2.11
NUP54-208ENST00000508604 MRPS18CQ9Y3D5 142 aaKnown RBP1.88□□□□□ -2.11
NUP54-208ENST00000508604 KLF18A0A0U1RQI7 1052 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 FEZF1A0PJY2 475 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 RNF103O00237 685 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 INPP4BO15327 924 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 PAPSS1O43252 624 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 ECE2O60344 883 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 USO1O60763 962 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 LETM1O95202 739 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 DANCRP0C864 163 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 C4BPBP20851 252 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 SLC1A4P43007 532 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 ZNF133P52736 654 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 MLF2Q15773 248 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 SLC22A6Q4U2R8 563 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 WDR78Q5VTH9 848 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 HAUS3Q68CZ6 603 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 IGFL2Q6UWQ7 119 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 MAATS1Q7Z4T9 603 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 ANKRD23Q86SG2 305 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 C17orf53Q8N3J3 647 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 GBP7Q8N8V2 638 aaPredicted RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 U2AF1L4Q8WU68 220 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 ATL1Q8WXF7 558 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 SKA1Q96BD8 255 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 PAFAH2Q99487 392 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 NAP1L4Q99733 375 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 MAK16Q9BXY0 300 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 SEPT11Q9NVA2 429 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 RSPH14Q9UHP6 348 aa1.87□□□□□ -2.11
NUP54-208ENST00000508604 CFAP65Q6ZU64 1925 aaKnown RBP1.87□□□□□ -2.11
NUP54-208ENST00000508604 KRTAP4-16G5E9R7 235 aaPredicted RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 CTDSP2O14595 271 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 SNX3O60493 162 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 KBTBD11O94819 623 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 VENTXO95231 258 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 ALOX5P09917 674 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 SELEP16581 610 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 GEMIN4P57678 1058 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 DCAF7P61962 342 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 DMTNQ08495 405 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 CUL3Q13618 768 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 CYLC2Q14093 348 aaPredicted RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 GCKRQ14397 625 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 DUSP5Q16690 384 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 CARM1Q86X55 608 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 GUF1Q8N442 669 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 LPGAT1Q92604 370 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 TSACCQ96A04 125 aaPredicted RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 C11orf52Q96A22 123 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 PPP1R16AQ96I34 528 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 CTRCQ99895 268 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 TSPYL1Q9H0U9 437 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 Q9H8V8 135 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.86□□□□□ -2.11
NUP54-208ENST00000508604 OLA1Q9NTK5 396 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 AASSQ9UDR5 926 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 PLEKHA6Q9Y2H5 1048 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 MRPL11Q9Y3B7 192 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 MYO15BQ96JP2 1530 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 ZCCHC6Q5VYS8 1495 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 A0A087WZ39 114 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 TCP11X1B4DZS4 312 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 CCER2I3L3R5 266 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 TNFSF12O43508 249 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 SCO2O43819 266 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 GJB3O75712 270 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 DNASE1P24855 282 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 MPZP25189 248 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 MAN1A1P33908 653 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 GARSP41250 739 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 MAPRE1Q15691 268 aaKnown RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 C15orf59Q2T9L4 293 aaPredicted RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 ZRANB3Q5FWF4 1079 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 PRR27Q6MZM9 219 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 PRSS55Q6UWB4 352 aaPredicted RBP1.86□□□□□ -2.11
NUP54-208ENST00000508604 TTC39CQ8N584 583 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 OR4C15Q8NGM1 316 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 FLVCR1-AS1Q8TAF5 88 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 ITFG2Q969R8 447 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 MOB3AQ96BX8 217 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 FAM210AQ96ND0 272 aa1.86□□□□□ -2.11
NUP54-208ENST00000508604 IL12RB2Q99665 862 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms