RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RPRD1AQ96P16 312 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 COQ7Q99807 217 aa16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 FAM126AQ9BYI3 521 aaPredicted RBP16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 NIPAL2Q9H841 368 aa16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 PLXNA4Q9HCM2 1894 aa16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 CHD5Q8TDI0 1954 aa16.51■□□□□ 0.23
SQSTM1-211ENST00000506690 IQCMA0A1B0GVH7 501 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 H7C0S8 307 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 FPGTO14772 594 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 GPR39O43194 453 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 LRATO95237 230 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 SCG5P05408 212 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 CSF3P09919 207 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 ANXA8P13928 327 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 KIR3DL1P43629 444 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 MAPKAPK2P49137 400 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 AP2S1P53680 142 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 RGMBQ6NW40 437 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 GDPGP1Q6ZNW5 385 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 ZNF767PQ75MW2 155 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 TRIM48Q8IWZ4 208 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 VANGL1Q8TAA9 524 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 UTP15Q8TED0 518 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 UBASH3BQ8TF42 649 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 LPPQ93052 612 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 PANX1Q96RD7 426 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 NIPSNAP1Q9BPW8 284 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 IMPAD1Q9NX62 359 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 MOSPD1Q9UJG1 213 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 SLC6A14Q9UN76 642 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 DUSP12Q9UNI6 340 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 CMAHPQ9Y471 501 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 ARL5CA6NH57 179 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 M0R129 80 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 STX7O15400 261 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 ARHGEF9O43307 516 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 TSPAN3O60637 253 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 EPB42P16452 691 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 CHMP24386 653 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 KIR2DL3P43628 341 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 DMC1Q14565 340 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 METTL2BQ6P1Q9 378 aaKnown RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 DPY19L3Q6ZPD9 716 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 SPATA2LQ8IUW3 424 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 OR4C15Q8NGM1 316 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 GPR152Q8TDT2 470 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 MYEOVQ96EZ4 313 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 C8orf48Q96LL4 319 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 PSKH2Q96QS6 385 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 TRAF4Q9BUZ4 470 aaPredicted RBP16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 TMEM245Q9H330 911 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 NDUFAF4Q9P032 175 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 VPS4AQ9UN37 437 aa16.5■□□□□ 0.23
SQSTM1-211ENST00000506690 SH3D21A4FU49 640 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 MAGEB17A8MXT2 336 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 ADAMDEC1O15204 470 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 INSIG1O15503 277 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SUV39H1O43463 412 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SCN2BO60939 215 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 C1QBP02746 253 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CPN2P22792 545 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 PRPH2P23942 346 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 HOXD9P28356 352 aaPredicted RBP16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 FAM189BP81408 668 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 DAB2P98082 770 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 ESCO2Q56NI9 601 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 PLAG1Q6DJT9 500 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CREB3L2Q70SY1 520 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 NLRP8Q86W28 1048 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 WDR36Q8NI36 951 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 BTN2A2Q8WVV5 523 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 APOL5Q9BWW9 433 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 PRRG3Q9BZD7 231 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 FAM83DQ9H4H8 585 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 EXOSC4Q9NPD3 245 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 FAM105AQ9NUU6 356 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SCML2Q9UQR0 700 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SPEF1Q9Y4P9 236 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 PCDHB1Q9Y5F3 818 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 ALPK3Q96L96 1907 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SCAMP3O14828 347 aaKnown RBP16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CLDN9O95484 217 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CR2P20023 1033 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CRYBB2P43320 205 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 ALDH9A1P49189 494 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 EFEMP1Q12805 493 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SMARCB1Q12824 385 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CPSF6Q16630 551 aaKnown RBP eCLIP16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 ZNF621Q6ZSS3 439 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 GLRX5Q86SX6 157 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 LSMEM1Q8N8F7 131 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 LPCAT1Q8NF37 534 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 GPRC5AQ8NFJ5 357 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 DOHHQ9BU89 302 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 CIPCQ9C0C6 399 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 SNTG1Q9NSN8 517 aa16.49■□□□□ 0.23
SQSTM1-211ENST00000506690 A0A0D9SEW6 157 aa16.48■□□□□ 0.23
SQSTM1-211ENST00000506690 ZNF670-ZNF695F2Z2N8 137 aa16.48■□□□□ 0.23
SQSTM1-211ENST00000506690 TRIM3O75382 744 aaPredicted RBP16.48■□□□□ 0.23
SQSTM1-211ENST00000506690 B3GAT3O94766 335 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms