RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 BTNL2Q9UIR0 455 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 NDRG4Q9ULP0 352 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 EXO1Q9UQ84 846 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 PCDHGA10Q9Y5H3 936 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TCF20Q9UGU0 1960 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 QSOX1O00391 747 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 DNAJB5O75953 348 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 NTRK1P04629 796 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ABCB1P08183 1280 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ELFN1P0C7U0 828 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 SYN1P17600 705 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 XPAP23025 273 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TIA1P31483 386 aaKnown RBP eCLIP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ASMTP46597 345 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 CASP9P55211 416 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ERVFC1P60507 584 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 PCDH1Q08174 1060 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ACOX1Q15067 660 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 RGNQ15493 299 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 NPTX1Q15818 432 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF805Q5CZA5 627 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TMEM220Q6QAJ8 160 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 LIPIQ6XZB0 460 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 OTOP2Q7RTS6 562 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 CAMKMTQ7Z624 323 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TRIM74Q86UV6 250 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ATG16L2Q8NAA4 619 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ABHD11Q8NFV4 315 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 STARD8Q92502 1023 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 UBE2FQ969M7 185 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 TCF25Q9BQ70 676 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 WRAP53Q9BUR4 548 aaKnown RBP9.5□□□□□ -0.89
CLIP1-204ENST00000501271 ASPSCR1Q9BZE9 553 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 REEP1Q9H902 201 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 HSPE1-MOB4S4R3N1 261 aa9.5□□□□□ -0.89
CLIP1-204ENST00000501271 GNG14A0A1W2PPG7 69 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 CARNS1A5YM72 827 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 PCDH7O60245 1069 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 GCM2O75603 506 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 GABARAPO95166 117 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 MT-ND2P03891 347 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 GBAP04062 536 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ACVR2AP27037 513 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 KRT20P35900 424 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 HPCAL1P37235 193 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 METAP1P53582 386 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 EPHA5P54756 1037 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 TBPL1P62380 186 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 NTHL1P78549 312 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 E2F2Q14209 437 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 MAD2L1BPQ15013 274 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF658BQ4V348 819 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 SPIN4Q56A73 249 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 CATSPEREQ5SY80 951 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 KIAA1614Q5VZ46 1190 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 FAHD1Q6P587 224 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 C16orf87Q6PH81 154 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF852Q6ZMS4 543 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 SLCO4C1Q6ZQN7 724 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 PARS2Q7L3T8 475 aaKnown RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 TSEN54Q7Z6J9 526 aaKnown RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 NAGSQ8N159 534 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 VN1R2Q8NFZ6 395 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF480Q8WV37 535 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 COQ8BQ96D53 544 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 METTL2AQ96IZ6 378 aaKnown RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ZSWIM3Q96MP5 696 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 APOL4Q9BPW4 351 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 GPATCH2Q9NW75 528 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 SH3BP4Q9P0V3 963 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 COQ6Q9Y2Z9 468 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ZNF451Q9Y4E5 1061 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 CDH23Q9H251 3354 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 ALPK3Q96L96 1907 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 PLXND1Q9Y4D7 1925 aa9.49□□□□□ -0.89
CLIP1-204ENST00000501271 KIF26AQ9ULI4 1882 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-204ENST00000501271 MGAT4DA6NG13 374 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 C1orf105O95561 183 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 FADS2O95864 444 aaKnown RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SOD1P00441 154 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 C9P02748 559 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RHOP08100 348 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 OPRL1P41146 370 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 VEGFBP49765 207 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 MVDP53602 400 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 CAMK2GQ13555 558 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TSTA3Q13630 321 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 NR1D2Q14995 579 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 COX20Q5RI15 118 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 C1orf53Q5VUE5 145 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 PLPP4Q5VZY2 271 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 CCDC81Q6ZN84 652 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 OR4K1Q8NGD4 311 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 OR4A15Q8NGL6 344 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 TRUB1Q8WWH5 349 aaKnown RBP9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RORBQ92753 470 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 SPATA9Q9BWV2 254 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RASSF1Q9NS23 344 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 RAD18Q9NS91 495 aa9.48□□□□□ -0.89
CLIP1-204ENST00000501271 DNAAF2Q9NVR5 837 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms