RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	BFAR	Q9NZS9	450 aa		12.89	□□□□□ -0.35
SAMM50-204	ENST00000493161	C19orf25	Q9UFG5	118 aa	Predicted RBP	12.89	□□□□□ -0.35
SAMM50-204	ENST00000493161	MED16	Q9Y2X0	877 aa		12.89	□□□□□ -0.35
SAMM50-204	ENST00000493161	HRH3	Q9Y5N1	445 aa		12.89	□□□□□ -0.35
SAMM50-204	ENST00000493161	SCN3A	Q9NY46	2000 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	FEZF1	A0PJY2	475 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF860	A6NHJ4	632 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161		H3BMM5	538 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	LCMT2	O60294	686 aa	Known RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	CD46	P15529	392 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	IMPA1	P29218	277 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	PTGER1	P34995	402 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	HSD17B2	P37059	387 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	COIL	P38432	576 aa	Predicted RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	TERF1	P54274	439 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	ADAR	P55265	1226 aa	Known RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	BASP1	P80723	227 aa	Known RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	ABRAXAS2	Q15018	415 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	SIX1	Q15475	284 aa	Predicted RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	EXT1	Q16394	746 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	MAPKAPK3	Q16644	382 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	SLC25A25	Q6KCM7	469 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	CYHR1	Q6ZMK1	362 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF227	Q86WZ6	799 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	MARVELD2	Q8N4S9	558 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	CPSF7	Q8N684	471 aa	Known RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	PRELID2	Q8N945	189 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	TMEM178A	Q8NBL3	297 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	OR5T3	Q8NGG3	340 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	CHTF18	Q8WVB6	975 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	ASB11	Q8WXH4	323 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	SDCCAG3	Q96C92	435 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	TREX2	Q9BQ50	279 aa	Predicted RBP	12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	LANCL2	Q9NS86	450 aa		12.88	□□□□□ -0.35
SAMM50-204	ENST00000493161	KCNE1B	A0A087WTH5	132 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF839	A8K0R7	811 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161		E5RI56	91 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161		E9PLN8	166 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	AVIL	O75366	819 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	CYC1	P08574	325 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	AGTR2	P50052	363 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	SLC26A5	P58743	744 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	ACTN3	Q08043	901 aa	Predicted RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	USP10	Q14694	798 aa	Known RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	NSDHL	Q15738	373 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	RNF187	Q5TA31	235 aa	Predicted RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF549	Q6P9A3	640 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	CILP2	Q8IUL8	1156 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	TMEM139	Q8IV31	216 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	GHDC	Q8N2G8	530 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	FBXO15	Q8NCQ5	510 aa	Predicted RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	CA5BP1	Q8WTZ4	195 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	PHF10	Q8WUB8	498 aa	Known RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	TM4SF19	Q96DZ7	209 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	PEX11G	Q96HA9	241 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	TCF12	Q99081	682 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	EBNA1BP2	Q99848	306 aa	Known RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	VKORC1	Q9BQB6	163 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	TMEM184C	Q9NVA4	438 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	LRFN1	Q9P244	771 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	PPT2	Q9UMR5	302 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	SOX13	Q9UN79	622 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	NAALAD2	Q9Y3Q0	740 aa		12.87	□□□□□ -0.35
SAMM50-204	ENST00000493161	GFY	I3L273	518 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NDC80	O14777	642 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NME2P1	O60361	137 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	SLC25A12	O75746	678 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	MLYCD	O95822	493 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	B3GALT4	O96024	378 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF24	P17028	368 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	OGN	P20774	298 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NME2	P22392	152 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	TPP2	P29144	1249 aa	Predicted RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	RFC3	P40938	356 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	SKIV2L2	P42285	1042 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	ZNF75D	P51815	510 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NR0B1	P51843	470 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	RPS15A	P62244	130 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	KIF5A	Q12840	1032 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	SEL1L2	Q5TEA6	688 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NEPRO	Q6NW34	567 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	MBOAT1	Q6ZNC8	495 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	PIWIL4	Q7Z3Z4	852 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	PCGF5	Q86SE9	256 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	SLC26A11	Q86WA9	606 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	DENND6A	Q8IWF6	608 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	SLC5A8	Q8N695	610 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	PLPP5	Q8NEB5	264 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	MCOLN3	Q8TDD5	553 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	ELP5	Q8TE02	316 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	LPAR4	Q99677	370 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	ANKH	Q9HCJ1	492 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	DRG1	Q9Y295	367 aa	Known RBP	12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	MTOR	P42345	2549 aa		12.86	□□□□□ -0.35
SAMM50-204	ENST00000493161	NKX2-6	A6NCS4	301 aa		12.85	□□□□□ -0.35
SAMM50-204	ENST00000493161	PRRG2	O14669	202 aa		12.85	□□□□□ -0.35
SAMM50-204	ENST00000493161	TSPAN12	O95859	305 aa		12.85	□□□□□ -0.35
SAMM50-204	ENST00000493161	MPC1L	P0DKB6	136 aa		12.85	□□□□□ -0.35
SAMM50-204	ENST00000493161	KCNJ1	P48048	391 aa		12.85	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms