RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 H3BMM5 538 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 GOLGA8TH3BQL2 631 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 NDC80O14777 642 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 NME2P1O60361 137 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 RDH16O75452 317 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 CDC123O75794 336 aaPredicted RBP13.12□□□□□ -0.31
VARS-227ENST00000489979 TPOP07202 933 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 NME2P22392 152 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 ARNTP27540 789 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 PTGS2P35354 604 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 SLC26A5P58743 744 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 RHAGQ02094 409 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 ABRAXAS2Q15018 415 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 NSDHLQ15738 373 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 THEMIS2Q5TEJ8 643 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 TMEM214Q6NUQ4 689 aaKnown RBP13.12□□□□□ -0.31
VARS-227ENST00000489979 PCGF5Q86SE9 256 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 CD163Q86VB7 1156 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 TMEM200AQ86VY9 491 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 RPS19BP1Q86WX3 136 aaKnown RBP13.12□□□□□ -0.31
VARS-227ENST00000489979 LGI4Q8N135 537 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 KIF2BQ8N4N8 673 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 PLPP5Q8NEB5 264 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 ZCCHC10Q8TBK6 192 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 FAM57AQ8TBR7 257 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 TSLPQ969D9 159 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 RBCK1Q9BYM8 510 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 UCK2Q9BZX2 261 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 CRYL1Q9Y2S2 319 aa13.12□□□□□ -0.31
VARS-227ENST00000489979 AKAP6Q13023 2319 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 A0A1B0GTH9 108 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 FOXO6A8MYZ6 492 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 LIASO43766 372 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 KIF5CO60282 957 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 VAPBO95292 243 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 SYF2O95926 243 aaKnown RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 ESR1P03372 595 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 TPP2P29144 1249 aaPredicted RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 DNAJA1P31689 397 aaKnown RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 RPS15AP62244 130 aaKnown RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 TFF3Q07654 80 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 MRNIPQ6NTE8 343 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 CES3Q6UWW8 571 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 SDCCAG8Q86SQ7 713 aaPredicted RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 ZNF227Q86WZ6 799 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 PDSS2Q86YH6 399 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 SPNS2Q8IVW8 549 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 REXO1L1PQ8IX06 675 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 DMRTC2Q8IXT2 367 aaPredicted RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 LRRC56Q8IYG6 542 aaPredicted RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 LILRB4Q8NHJ6 448 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ELP5Q8TE02 316 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ASB5Q8WWX0 329 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 NRGNQ92686 78 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 MFSD3Q96ES6 412 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 PEX11GQ96HA9 241 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 CCDC138Q96M89 665 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ZNF559Q9BR84 538 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ANKHQ9HCJ1 492 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 TMEM184CQ9NVA4 438 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ZNF148Q9UQR1 794 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 REXO2Q9Y3B8 237 aaKnown RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 HRH3Q9Y5N1 445 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 ACANP16112 2415 aa13.11□□□□□ -0.31
VARS-227ENST00000489979 MAP1AP78559 2803 aaPredicted RBP13.11□□□□□ -0.31
VARS-227ENST00000489979 ABCA4P78363 2273 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 KCNE1BA0A087WTH5 132 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 MIF4GDA9UHW6 222 aaKnown RBP13.1□□□□□ -0.31
VARS-227ENST00000489979 E5RI56 91 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 CDK2AP1O14519 115 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 TFECO14948 347 aaPredicted RBP13.1□□□□□ -0.31
VARS-227ENST00000489979 CDC40O60508 579 aaKnown RBP eCLIP13.1□□□□□ -0.31
VARS-227ENST00000489979 TOXO94900 526 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 FTCDO95954 541 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 MSX1P28360 303 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 RFC3P40938 356 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 CYB561P49447 251 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 MEOX1P50221 254 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 IST1P53990 364 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 OR4D2P58180 307 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 TYSND1Q2T9J0 566 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 RNF187Q5TA31 235 aaPredicted RBP13.1□□□□□ -0.31
VARS-227ENST00000489979 MEI1Q5TIA1 1274 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 TMEM211Q6ICI0 200 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 MMP21Q8N119 569 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 KCT2Q8NC54 265 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 FBXO15Q8NCQ5 510 aaPredicted RBP13.1□□□□□ -0.31
VARS-227ENST00000489979 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 C1orf54Q8WWF1 131 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 SLC30A3Q99726 388 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 IL22Q9GZX6 179 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 KCNJ16Q9NPI9 418 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 LANCL2Q9NS86 450 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 BFARQ9NZS9 450 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 PAK5Q9P286 719 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 RNF6Q9Y252 685 aa13.1□□□□□ -0.31
VARS-227ENST00000489979 PHF3Q92576 2039 aaKnown RBP13.1□□□□□ -0.31
VARS-227ENST00000489979 DNAJC13O75165 2243 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 ZNF407Q9C0G0 2248 aa13.09□□□□□ -0.31
VARS-227ENST00000489979 FEZF1A0PJY2 475 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms