RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 ZC3HC1Q86WB0 502 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TMPRSS12Q86WS5 348 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ADHFE1Q8IWW8 467 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PAQR4Q8N4S7 273 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 STEAP2Q8NFT2 490 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RDM1Q8NG50 284 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 OR56B1Q8NGI3 324 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 BBS10Q8TAM1 723 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 HMGCLL1Q8TB92 370 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 GPT2Q8TD30 523 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 HDAC7Q8WUI4 952 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NEUROG1Q92886 237 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 STAMBPL1Q96FJ0 436 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PIWIL1Q96J94 861 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LRR1Q96L50 414 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PRMT6Q96LA8 375 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TEFMQ96QE5 360 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 FRG2BQ96QU4 278 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NAP1L3Q99457 506 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DDX50Q9BQ39 737 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CCDC77Q9BR77 488 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TBC1D10AQ9BXI6 508 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 SLC2A11Q9BYW1 496 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DPEP3Q9H4B8 488 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 METTL7AQ9H8H3 244 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CHMP1AQ9HD42 196 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 YAE1D1Q9NRH1 226 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ACSS1Q9NUB1 689 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TMEM161AQ9NX61 479 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NDRG3Q9UGV2 375 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PCDHA7Q9UN72 937 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ZHX2Q9Y6X8 837 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DLC1Q96QB1 1528 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TRPM1Q7Z4N2 1603 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RGPD8O14715 1765 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 C13orf42A0A1B0GVH6 325 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RPS10-NUDT3A0A1W2PQS6 291 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TMEM202A6NGA9 273 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ARHGAP42A6NI28 874 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LRRIQ4A6NIV6 560 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PRSS46E5RG02 174 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MEIS2O14770 477 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ANKRD28O15084 1053 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MAGEB2O15479 319 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CLDN3O15551 220 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PRAMEF11O60813 436 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LRP3O75074 770 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CRCPO75575 148 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RGS11O94810 467 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 GSRP00390 522 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 IFNA2P01563 188 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CSN3P07498 182 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 POLR2MP0CAP2 368 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 B4GALT1P15291 398 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CDH3P22223 829 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 GALP22466 123 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 HRH2P25021 359 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PKLRP30613 574 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PRCPP42785 496 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NUDT6P53370 316 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MAPK12P53778 367 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TMPRSS3P57727 454 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ROR2Q01974 943 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CNTN2Q02246 1040 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ACY1Q03154 408 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LIPEQ05469 1076 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MSLNQ13421 630 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 GALNT3Q14435 633 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MELKQ14680 651 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 WASHC2DQ5SRD0 308 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 C9orf50Q5SZB4 431 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ATAD3BQ5T9A4 648 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TMEM268Q5VZI3 342 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 ANGPTL8Q6UXH0 198 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DLEU7Q6UYE1 221 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CYB5R4Q7L1T6 521 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NRARPQ7Z6K4 114 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CTU1Q7Z7A3 348 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 GPR180Q86V85 440 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CCDC25Q86WR0 208 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PHC2Q8IXK0 858 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 KLHDC8AQ8IYD2 350 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DCP1BQ8IZD4 617 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 DCLK2Q8N568 766 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NIPA2Q8N8Q9 360 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 OR1J2Q8NGS2 313 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 PIGBQ92521 554 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 APBB2Q92870 758 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 RHBDF1Q96CC6 855 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 FBXL8Q96CD0 374 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 MAGED4Q96JG8 741 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 C4orf36Q96KX1 117 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 CNOT6LQ96LI5 555 aaKnown RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 LRFN5Q96NI6 719 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 AGAP3Q96P47 875 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 SLITRK1Q96PX8 696 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TAAR6Q96RI8 345 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 NUDCD1Q96RS6 583 aa3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 JPH2Q9BR39 696 aaPredicted RBP3.01□□□□□ -1.93
DEPDC1-204ENST00000489862 TBCDQ9BTW9 1192 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 1250.4 ms