RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CD1CP29017 333 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 PRDX6P30041 224 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 HTR6P50406 440 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 EMP3P54852 163 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 SKP1P63208 163 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 RGS1Q08116 209 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 ACSM2AQ08AH3 577 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 TRA2AQ13595 282 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP39-215ENST00000481409 KRT72Q14CN4 511 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 KIAA0040Q15053 153 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 MAPRE2Q15555 327 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 ADPRMQ3LIE5 342 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 PDCD4Q53EL6 469 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 TCTE1Q5JU00 501 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 VWA5B1Q5TIE3 1220 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 KHDRBS2Q5VWX1 349 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 ACSM2BQ68CK6 577 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 IRGCQ6NXR0 463 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 C6orf89Q6UWU4 347 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 YTHDF3Q7Z739 585 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 MTDHQ86UE4 582 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 SFTPA2Q8IWL1 248 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP39-215ENST00000481409 FNDC5Q8NAU1 212 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 OR4D9Q8NGE8 314 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 CHTF18Q8WVB6 975 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 JPH3Q8WXH2 748 aaPredicted RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 NCSTNQ92542 709 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 TM4SF19Q96DZ7 209 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 CNDP2Q96KP4 475 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 FCRL1Q96LA6 429 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 OR52B2Q96RD2 323 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 MTERF1Q99551 399 aaKnown RBP9.73□□□□□ -0.85
USP39-215ENST00000481409 EDEM2Q9BV94 578 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 MS4A8Q9BY19 250 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 BRINP2Q9C0B6 783 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 LRRN3Q9H3W5 708 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 PDE7BQ9NP56 450 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 FSCN3Q9NQT6 498 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 ZIM2Q9NZV7 527 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 FTSJ1Q9UET6 329 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 SLC12A4Q9UP95 1085 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 U3KQA8 63 aa9.73□□□□□ -0.85
USP39-215ENST00000481409 SDK1Q7Z5N4 2213 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ARID1BQ8NFD5 2236 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 ATP6AP2A0A1C7CYW4 349 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 E9PBE3 544 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 FCHO1O14526 889 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 KLHL41O60662 606 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 PEX11AO75192 247 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ATP6AP2O75787 350 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 NCF2P19878 526 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 RPL3P39023 403 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 BCL6P41182 706 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ASMTP46597 345 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 MNAT1P51948 309 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 LIMK1P53667 647 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 OR1D5P58170 312 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 C21orf58P58505 322 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 RPS13P62277 151 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 TRA2BP62995 288 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 HSD11B2P80365 405 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 E2F1Q01094 437 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 HERC3Q15034 1050 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 RPS6KA2Q15349 733 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ZIC1Q15915 447 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 TCHHL1Q5QJ38 904 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 TMTC4Q5T4D3 741 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 YOD1Q5VVQ6 348 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 FCRL6Q6DN72 434 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 FBXO42Q6P3S6 717 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 PRR23CQ6ZRP0 262 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 CLNKQ7Z7G1 428 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ASPGQ86U10 573 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 BPHLQ86WA6 291 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 METTL4Q8N3J2 472 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ANKRD53Q8N9V6 530 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 GLB1L3Q8NCI6 653 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 OR2T11Q8NH01 316 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 IFI44Q8TCB0 444 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 RHBDD1Q8TEB9 315 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 CREB3L4Q8TEY5 395 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 SLC13A3Q8WWT9 602 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 KLHL6Q8WZ60 621 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 GAL3ST3Q96A11 431 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 RGMAQ96B86 450 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 MTFMTQ96DP5 389 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 CMTM5Q96DZ9 223 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 C11orf24Q96F05 449 aaPredicted RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 SLC41A2Q96JW4 573 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 KCNC2Q96PR1 638 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 OR2A5Q96R48 311 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 CCDC3Q9BQI4 270 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 SPNS1Q9H2V7 528 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 ZNF768Q9H5H4 540 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 ZNF385DQ9H6B1 395 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 CAAP1Q9H8G2 361 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 CLK4Q9HAZ1 481 aaKnown RBP9.72□□□□□ -0.85
USP39-215ENST00000481409 PRDM9Q9NQV7 894 aa9.72□□□□□ -0.85
USP39-215ENST00000481409 SDR39U1Q9NRG7 319 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms