RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TFB2MQ9H5Q4 396 aaKnown RBP4.66□□□□□ -1.66
UPF3B-203ENST00000478840 RNF121Q9H920 327 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 DONSONQ9NYP3 566 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 SPASTQ9UBP0 616 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 SLC12A6Q9UHW9 1150 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 RIPK3Q9Y572 518 aa4.66□□□□□ -1.66
UPF3B-203ENST00000478840 CFAP73A6NFT4 308 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 SLC15A5A6NIM6 579 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 SLC28A1O00337 649 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 RASGRF2O14827 1237 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 GLRA3O75311 464 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 TSHBP01222 138 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 NR3C1P04150 777 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 SKILP12757 684 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 UGT1A6P19224 532 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ALDH1B1P30837 517 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 SRD5A2P31213 254 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 DCTP40126 519 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 CDKN2AP42771 156 aaKnown RBP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 CNN1P51911 297 aaKnown RBP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 GCNT1Q02742 428 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 GK2Q14410 553 aaPredicted RBP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 EPC2Q52LR7 807 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 TECRLQ5HYJ1 363 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 COX8CQ7Z4L0 72 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 NLRP14Q86W24 1093 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ARL6IP6Q8N6S5 226 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 LRTM2Q8N967 370 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 TMEM185AQ8NFB2 350 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 C14orf79Q96F83 325 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ZNF583Q96ND8 569 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 GUCD1Q96NT3 240 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 BTBD9Q96Q07 612 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 RHNO1Q9BSD3 238 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 TRMT61BQ9BVS5 477 aaKnown RBP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 C1QTNF4Q9BXJ3 329 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ABCG4Q9H172 646 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ECHDC1Q9NTX5 307 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ZCCHC3Q9NUD5 404 aaKnown RBP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 PIGVQ9NUD9 493 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP4.65□□□□□ -1.67
UPF3B-203ENST00000478840 PLEKHA6Q9Y2H5 1048 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 CLCA3PQ9Y6N3 262 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 CACNA1IQ9P0X4 2223 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 ARID2Q68CP9 1835 aa4.65□□□□□ -1.67
UPF3B-203ENST00000478840 RGSL1A5PLK6 1076 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 H3BMM5 538 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SLC22A2O15244 555 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 MAGEB2O15479 319 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SMAD6O43541 496 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SOCS5O75159 536 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 CLN5O75503 358 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 GRAP2O75791 330 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 CDK2AP2O75956 126 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 PGK2P07205 417 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 DARSP14868 501 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 CPA3P15088 417 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 FERP16591 822 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ARF4P18085 180 aaPredicted RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 LHCGRP22888 699 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 RBMS1P29558 406 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ASMTP46597 345 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 DVL1P1P54792 670 aaPredicted RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 HUNKP57058 714 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SRP54P61011 504 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 KEAP1Q14145 624 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ZCCHC12Q6PEW1 402 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 PSRC1Q6PGN9 363 aaPredicted RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 G2E3Q7L622 706 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SLC16A9Q7RTY1 509 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ADAMTSL2Q86TH1 951 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 THEM5Q8N1Q8 247 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 FBXW8Q8N3Y1 598 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 CCNYQ8ND76 341 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 OR13C3Q8NGS6 347 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 METTL21AQ8WXB1 218 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 HAS2Q92819 552 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ULK4Q96C45 1275 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 LGALS12Q96DT0 336 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 ALG14Q96F25 216 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 MED30Q96HR3 178 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 SAMD8Q96LT4 415 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 C16orf45Q96MC5 204 aaPredicted RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 KRTAP17-1Q9BYP8 105 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 LIN28AQ9H9Z2 209 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 EXOC1Q9NV70 894 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 FBXL4Q9UKA2 621 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 BLOC1S6Q9UL45 172 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 GRID1Q9ULK0 1009 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 TMED7Q9Y3B3 224 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 R4GN57 208 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 UBE4BO95155 1302 aa4.64□□□□□ -1.67
UPF3B-203ENST00000478840 MYH14Q7Z406 1995 aaKnown RBP4.64□□□□□ -1.67
UPF3B-203ENST00000478840 IGHV4-61A0A0C4DH41 118 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MACROD2A1Z1Q3 448 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 MTMR11A4FU01 709 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 ARHGAP42A6NI28 874 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 KPNA7A9QM74 516 aa4.63□□□□□ -1.67
UPF3B-203ENST00000478840 C16orf97H3BN30 126 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms