RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF57Q68EA5 555 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 ERN2Q76MJ5 926 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 PHF12Q96QT6 1004 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 CPEB1Q9BZB8 566 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 MRPS33Q9Y291 106 aaKnown RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 CAB39Q9Y376 341 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 CENPXA8MT69 81 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 I6L893 689 aaPredicted RBP14.14□□□□□ -0.15
HDAC6-220ENST00000477528 OXTRP30559 389 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 TMBIM6P55061 237 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 ACVR1Q04771 509 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 TARDBPQ13148 414 aaKnown RBP eCLIP14.14□□□□□ -0.155e-7■■■■■ 32
HDAC6-220ENST00000477528 ZIC5Q96T25 663 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 OR10H1Q9Y4A9 318 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 PRSS21Q9Y6M0 314 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 LTBP1Q14766 1721 aa14.14□□□□□ -0.15
HDAC6-220ENST00000477528 PRR23D1E9PI22 279 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RFPL2O75678 378 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RASGRP1O95267 797 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 IFNA16P05015 189 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 BCHEP06276 602 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RETP07949 1114 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PRR23D2P0DMB1 279 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 KCNC1P48547 511 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 GSTM4Q03013 218 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 ILF3Q12906 894 aaKnown RBP eCLIP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 FAM129CQ86XR2 697 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PIGXQ8TBF5 258 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PROKR1Q8TCW9 393 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 LOC110117498-PIK3R3F6TDL0 507 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TOR1BO14657 336 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TMCC2O75069 709 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 CCR4P51679 360 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TBPL1P62380 186 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MYBPC1Q00872 1141 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RBBP4Q09028 425 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 LRRC32Q14392 662 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 DHCR24Q15392 516 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TMEM207Q6UWW9 146 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 HEATR4Q86WZ0 1026 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RNF130Q86XS8 419 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 SMYD1Q8NB12 490 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 C1GALT1C1Q96EU7 318 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MAPKAP1Q9BPZ7 522 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 BRINP2Q9C0B6 783 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PLAC1Q9HBJ0 212 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 ZDHHC4Q9NPG8 344 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 DNAAF2Q9NVR5 837 aaKnown RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 FAM118AQ9NWS6 357 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PCDHB14Q9Y5E9 798 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PEX16Q9Y5Y5 336 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 H7C0S8 307 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MFN2O95140 757 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 CSNK2A2P19784 350 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 CTSOP43234 321 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 USP43Q70EL4 1123 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TFAP2CQ92754 450 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 SLC30A3Q99726 388 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 SRMSQ9H3Y6 488 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PRKAB1Q9Y478 270 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 ACOT8O14734 319 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 UGDHO60701 494 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 DNAJB5O75953 348 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 ARSAP15289 507 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MPIP34949 423 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MEF2AQ02078 507 aaPredicted RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 ELAVL3Q14576 367 aaKnown RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 CACTIN-AS1Q8N1I8 211 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 MFSD2AQ8NA29 543 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 HERVK_113Q902F9 699 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RAB7BQ96AH8 199 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 APIPQ96GX9 242 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 HHIPL1Q96JK4 782 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 PKP4Q99569 1192 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 IL23AQ9NPF7 189 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 TAS2R9Q9NYW1 312 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 GPRC5BQ9NZH0 403 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 VAPAQ9P0L0 249 aa14.13□□□□□ -0.15
HDAC6-220ENST00000477528 RPL36Q9Y3U8 105 aaKnown RBP14.13□□□□□ -0.15
HDAC6-220ENST00000477528 VEGFDO43915 354 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 LAMP2P13473 410 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 RPL10P27635 214 aaKnown RBP14.12□□□□□ -0.15
HDAC6-220ENST00000477528 SGSHP51688 502 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 FADDQ13158 208 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 MRPL58Q14197 206 aaKnown RBP14.12□□□□□ -0.15
HDAC6-220ENST00000477528 MOGQ16653 247 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF544Q6NX49 715 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 FAM20CQ8IXL6 584 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 CAMK1GQ96NX5 476 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 DOHHQ9BU89 302 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF334Q9HCZ1 680 aaPredicted RBP14.12□□□□□ -0.15
HDAC6-220ENST00000477528 SOHLH2Q9NX45 425 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 PLAGL1Q9UM63 463 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 LRRC72A6NJI9 287 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 C1QAP02745 245 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 H1F0P07305 194 aaKnown RBP14.12□□□□□ -0.15
HDAC6-220ENST00000477528 SUOXP51687 545 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 HUS1BQ8NHY5 278 aa14.12□□□□□ -0.15
HDAC6-220ENST00000477528 ZNF689Q96CS4 500 aaPredicted RBP14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms