RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 SF1Q15637 639 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 AGTRAPQ6RW13 159 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 SUSD1Q6UWL2 747 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TIFABQ6ZNK6 161 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 CDHR3Q6ZTQ4 885 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 FRA10AC1Q70Z53 315 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TDRPQ86YL5 185 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 GPR135Q8IZ08 494 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 ZNF295-AS1Q8N0V1 137 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 C19orf47Q8N9M1 422 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 OR2L3Q8NG85 312 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 KCTD4Q8WVF5 259 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 FBXL8Q96CD0 374 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 NXNL1Q96CM4 212 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 CLIP3Q96DZ5 547 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 DPH2Q9BQC3 489 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 NLNQ9BYT8 704 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 TRIM8Q9BZR9 551 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 VPS11Q9H270 941 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 CHST8Q9H2A9 424 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 ACTR5Q9H9F9 607 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 CCDC177Q9NQR7 707 aaPredicted RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 INTS7Q9NVH2 962 aaKnown RBP11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 AP1M2Q9Y6Q5 423 aa11.37□□□□□ -0.59
SQSTM1-206ENST00000466342 E7EQ34 232 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 KLHL2O95198 593 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 CCNDBP1O95273 360 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 EDN3P14138 238 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 TFEBP19484 476 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 MAGP20916 626 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 CCND1P24385 295 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 CMPK1P30085 196 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 RPA3P35244 121 aaPredicted RBP11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 SLCO1A2P46721 670 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 NAA25Q14CX7 972 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 TGFBIQ15582 683 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 FAM83EQ2M2I3 478 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 PRAMEF17Q5VTA0 474 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 PRAMEF13Q5VWM6 474 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 Q6ZS92 163 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 ISCA2Q86U28 154 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 FAM20CQ8IXL6 584 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 EPS8L3Q8TE67 593 aaKnown RBP11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 ATL1Q8WXF7 558 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 N4BP2L2Q92802 583 aaPredicted RBP11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 CABS1Q96KC9 395 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 MIPEPQ99797 713 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 EGFL8Q99944 293 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 ACAT2Q9BWD1 397 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 SGPP1Q9BX95 441 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 SLC7A5P2Q9GIP4 190 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 KLHL25Q9H0H3 589 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 ATG10Q9H0Y0 220 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 ALG9Q9H6U8 611 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 FAM60AQ9NP50 221 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 PCMTD2Q9NV79 361 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 EURLQ9NYK6 297 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 TBK1Q9UHD2 729 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 TAC3Q9UHF0 121 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 RNF112Q9ULX5 631 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 PCDHGA10Q9Y5H3 936 aa11.36□□□□□ -0.59
SQSTM1-206ENST00000466342 SPTBP11277 2137 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CCDC151A5D8V7 595 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 TARM1B6A8C7 271 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ZNF749O43361 778 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 KLHL41O60662 606 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 KERAO60938 352 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CDH16O75309 829 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CD63P08962 238 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 COL6A2P12110 1019 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CD1EP15812 388 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 AGXTP21549 392 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 HTR1EP28566 365 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 SSTR2P30874 369 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 GRIA3P42263 894 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 GABRA4P48169 554 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 HNMTP50135 292 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 PRDX1Q06830 199 aaKnown RBP11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 NAE1Q13564 534 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ACAP2Q15057 778 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ZIC1Q15915 447 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ZNF630Q2M218 657 aaPredicted RBP11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 VWA2Q5GFL6 755 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CDKL4Q5MAI5 379 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 THEMIS2Q5TEJ8 643 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ICE2Q659A1 982 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CAPN13Q6MZZ7 669 aaPredicted RBP11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 KLC3Q6P597 504 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 CUZD1Q86UP6 607 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 GPSM1Q86YR5 675 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 PLD6Q8N2A8 252 aaKnown RBP11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 ZADH2Q8N4Q0 377 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 DNAJC22Q8N4W6 341 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 PDPRQ8NCN5 879 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 OR56A3Q8NH54 315 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 OR2W6PQ8NHA6 318 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 RHEBL1Q8TAI7 183 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 STAG3L4Q8TBR4 150 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 MZB1Q8WU39 189 aa11.35□□□□□ -0.59
SQSTM1-206ENST00000466342 RELTQ969Z4 430 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms