RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 PQLC3Q8N755 202 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SETD6Q8TBK2 473 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 FNDC8Q8TC99 324 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CD180Q99467 661 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TM9SF2Q99805 663 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 NANOGQ9H9S0 305 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZDHHC4Q9NPG8 344 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 MKS1Q9NXB0 559 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 DNAJC27Q9NZQ0 273 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 GIMAP2Q9UG22 337 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 NOP16Q9Y3C1 178 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CDH10Q9Y6N8 788 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TMEM150CB9EJG8 249 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 M0R233 179 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SLC31A1O15431 190 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ERI3O43414 337 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 RPP14O95059 124 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ELK4P28324 431 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 BMP8BP34820 402 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 KCNC4Q03721 635 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SEC23BQ15437 767 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF423Q2M1K9 1284 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 OGFRL1Q5TC84 451 aaPredicted RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 MEDAGQ5VYS4 303 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ALKBH2Q6NS38 261 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 BMP8AQ7Z5Y6 402 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 THOC6Q86W42 341 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 PLD6Q8N2A8 252 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TXNDC5Q8NBS9 432 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 KCT2Q8NC54 265 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 C2CD4AQ8NCU7 369 aaPredicted RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 NR4A3Q92570 626 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 KCNA7Q96RP8 456 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ABCG4Q9H172 646 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ADAMTS10Q9H324 1103 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 NSUN3Q9H649 340 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TLE6Q9H808 572 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 MRM3Q9HC36 420 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CENPMQ9NSP4 180 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CACNG4Q9UBN1 327 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 EXOSC1Q9Y3B2 195 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SH3PXD2BA1X283 911 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF670-ZNF695F2Z2N8 137 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SDHDO14521 159 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 GNAO1P09471 354 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CLUP10909 449 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 PTPN2P17706 415 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 RPL17P18621 184 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 LHCGRP22888 699 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CCKBRP32239 447 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF81P51508 661 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 PSMA6P60900 246 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ST3GAL4Q11206 333 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 LAPTM4AQ15012 233 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZMYND11Q15326 602 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CTC1Q2NKJ3 1217 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 BTBD16Q32M84 506 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 C6orf136Q5SQH8 315 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 FAM182AQ5T1J6 154 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 VITQ6UXI7 678 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SLC36A4Q6YBV0 504 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 HFE2Q6ZVN8 426 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 RPS27LQ71UM5 84 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 LRP10Q7Z4F1 713 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TMED4Q7Z7H5 227 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF101Q8IZC7 436 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 YIPF7Q8N8F6 280 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 OR8J3Q8NGG0 315 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 GRHL3Q8TE85 626 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 WFIKKN2Q8TEU8 576 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 HERVK_113Q902F9 699 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 SMPDL3AQ92484 453 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 S100A16Q96FQ6 103 aaKnown RBP7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CD93Q9NPY3 652 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 PCDHGB2Q9Y5G2 931 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 TCHHQ07283 1943 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF541Q9H0D2 1346 aa7.55□□□□□ -1.2
NEDD9-204ENST00000448183 CACNA1FO60840 1977 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 KDM4FA0A1W2PPD8 638 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TTC24A2A3L6 582 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF487B1APH4 448 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 H0YJX3 145 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 CAPN5O15484 640 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HPRP00739 348 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PENKP01210 267 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 PRKCGP05129 697 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 JUNP05412 331 aaKnown RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MAN2A2P49641 1150 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 DIO3P55073 304 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 HNRNPA0Q13151 305 aaKnown RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 OLIG2Q13516 323 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 MYLK3Q32MK0 819 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 DNM1P34Q6PK57 102 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 GDPD4Q6W3E5 623 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF367Q7RTV3 350 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 TMCO2Q7Z6W1 182 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 JAGN1Q8N5M9 183 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 FBXO15Q8NCQ5 510 aaPredicted RBP7.54□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF675Q8TD23 568 aa7.54□□□□□ -1.2
NEDD9-204ENST00000448183 NPY6RQ99463 290 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms